FiT-DB / Search/ Help/ Sample detail
|
Os02g0784700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.09 | 0.249 | 12.3 | -0.0236 | 0.0864 | -0.756 | -0.499 | -0.203 | -0.161 | 23.5 | 2.008 | 1501 | -- | -- |
| 28.12 | 0.247 | 12.3 | -0.0401 | 0.0995 | -0.734 | -0.524 | -- | -0.169 | 23.5 | 2.116 | 1509 | -- | -- |
| 29.09 | 0.251 | 12.3 | -0.0266 | 0.0928 | -0.798 | -- | -0.486 | -0.164 | 22.9 | 1.891 | 1505 | -- | -- |
| 29.3 | 0.252 | 12.3 | -0.0206 | 0.0893 | -0.709 | -- | -- | -0.16 | 22.7 | 2.05 | 1503 | -- | -- |
| 29.46 | 0.253 | 12.3 | -0.0186 | -- | -0.716 | -- | -0.31 | -0.155 | -- | 1.94 | 1480 | -- | -- |
| 33.38 | 0.271 | 12.3 | 0.0928 | 0.0277 | -- | 0.461 | -- | -0.0715 | 12.1 | -- | -- | -- | -- |
| 34.26 | 0.274 | 12.3 | 0.112 | 0.0399 | -- | -- | -- | -0.0687 | 15.4 | -- | -- | -- | -- |
| 29.55 | 0.253 | 12.3 | -0.0167 | -- | -0.651 | -- | -- | -0.155 | -- | 2.04 | 1475 | -- | -- |
| 29.31 | 0.252 | 12.3 | -- | 0.0872 | -0.7 | -- | -- | -0.157 | 22.7 | 2.1 | 1503 | -- | -- |
| 34.35 | 0.274 | 12.3 | 0.11 | -- | -- | -- | -- | -0.0698 | -- | -- | -- | -- | -- |
| 34.59 | 0.275 | 12.3 | -- | 0.0376 | -- | -- | -- | -0.0812 | 15.4 | -- | -- | -- | -- |
| 29.55 | 0.253 | 12.3 | -- | -- | -0.645 | -- | -- | -0.151 | -- | 2.064 | 1475 | -- | -- |
| 34.67 | 0.275 | 12.3 | -- | -- | -- | -- | -- | -0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.70 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 3 | 27.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 15 | 27.97 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 20 | 27.99 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 24 | 28.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 25 | 28.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 26 | 28.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 28 | 28.01 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 42 | 28.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 48 | 28.08 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 51 | 28.09 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 108 | 28.21 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 112 | 28.21 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 134 | 28.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 139 | 28.26 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 144 | 28.27 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 146 | 28.28 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 183 | 28.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 190 | 28.32 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 225 | 28.34 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 11 | 8 |
| 259 | 28.37 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 267 | 28.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 272 | 28.38 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 283 | 28.39 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 314 | 28.42 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 323 | 28.42 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 337 | 28.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 351 | 28.44 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 366 | 28.45 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 374 | 28.46 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 2 | NA |
| 405 | 28.48 | radiation | 1.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 449 | 28.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 451 | 28.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 474 | 28.52 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 493 | 28.53 | radiation | 1.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 494 | 28.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 498 | 28.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 527 | 28.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 545 | 28.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 565 | 28.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 589 | 28.58 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 594 | 28.58 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 651 | 28.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 682 | 28.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 700 | 28.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 711 | 28.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 719 | 28.63 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 729 | 28.63 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 732 | 28.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 742 | 28.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 765 | 28.64 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 774 | 28.64 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 782 | 28.64 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 784 | 28.64 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 792 | 28.64 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 795 | 28.64 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 836 | 28.65 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 837 | 28.65 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 872 | 28.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 873 | 28.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 875 | 28.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 878 | 28.66 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 879 | 28.66 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 881 | 28.66 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 891 | 28.66 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 892 | 28.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 894 | 28.66 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 895 | 28.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 6 |
| 899 | 28.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 9 |
| 907 | 28.66 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 944 | 28.67 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 965 | 28.67 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 996 | 28.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
