Os02g0782600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).
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Os02g0782600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.47 | 0.419 | 11.6 | -0.396 | 1.83 | 1.04 | 0.209 | -2.32 | 0.299 | 4.68 | 25.63 | 5584 | -- | -- |
| 81.38 | 0.42 | 11.5 | 0.225 | 1.81 | 0.825 | 0.0265 | -- | 0.441 | 4.74 | 25.87 | 5579 | -- | -- |
| 79.41 | 0.415 | 11.6 | -0.417 | 1.83 | 1.04 | -- | -2.51 | 0.32 | 4.66 | 26.31 | 5601 | -- | -- |
| 81.32 | 0.42 | 11.5 | 0.23 | 1.82 | 0.816 | -- | -- | 0.443 | 4.68 | 25.67 | 5609 | -- | -- |
| 254.32 | 0.743 | 11.6 | -0.518 | -- | 1.28 | -- | -3.2 | 0.412 | -- | 27.53 | 5573 | -- | -- |
| 105.77 | 0.482 | 11.5 | 0.529 | 1.88 | -- | 0.274 | -- | 0.51 | 4.6 | -- | -- | -- | -- |
| 105.97 | 0.482 | 11.5 | 0.528 | 1.88 | -- | -- | -- | 0.508 | 4.59 | -- | -- | -- | -- |
| 255.75 | 0.745 | 11.5 | 0.238 | -- | 1 | -- | -- | 0.518 | -- | 26.4 | 5565 | -- | -- |
| 82.5 | 0.423 | 11.5 | -- | 1.83 | 0.887 | -- | -- | 0.39 | 4.66 | 24.83 | 5620 | -- | -- |
| 294.23 | 0.802 | 11.5 | 0.6 | -- | -- | -- | -- | 0.558 | -- | -- | -- | -- | -- |
| 113.31 | 0.498 | 11.5 | -- | 1.89 | -- | -- | -- | 0.45 | 4.59 | -- | -- | -- | -- |
| 257.23 | 0.747 | 11.5 | -- | -- | 1.04 | -- | -- | 0.471 | -- | 26.2 | 5577 | -- | -- |
| 303.73 | 0.813 | 11.5 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 67 | 79.88 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 103 | 80.27 | humidity | 50 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 177 | 81.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 181 | 81.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 244 | 81.40 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 313 | 82.05 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 314 | 82.10 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 328 | 82.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 330 | 82.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 343 | 82.38 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 344 | 82.40 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 11 |
| 347 | 82.47 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 348 | 82.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 354 | 82.53 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 355 | 82.53 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 359 | 82.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 365 | 82.66 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 368 | 82.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 411 | 82.86 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 421 | 82.89 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 428 | 82.91 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 431 | 82.91 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 443 | 82.95 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 447 | 82.96 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 457 | 82.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 462 | 82.99 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 466 | 83.01 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 474 | 83.03 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 478 | 83.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 487 | 83.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 488 | 83.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 513 | 83.12 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 524 | 83.13 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 532 | 83.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 595 | 83.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 633 | 83.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 636 | 83.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 651 | 83.29 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 656 | 83.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 664 | 83.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 677 | 83.32 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 679 | 83.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 697 | 83.32 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 702 | 83.33 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 726 | 83.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 768 | 83.38 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 788 | 83.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 883 | 83.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 888 | 83.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 894 | 83.51 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 8 |
| 937 | 83.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 938 | 83.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 978 | 83.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 991 | 83.57 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |