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Os02g0782100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chorismate synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0281) R2 : 0.519
β1 : 1.05 (0.103) R2dD : 0.114 R2D : 0.0771
β2 : 1.4 (0.0708) R2dC : 0.415 R2C : 0.391
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.297 (0.06) R2dN8 : 0.0346 R2N8 : 3.38e-05
σ : 0.528
deviance : 127.32
__
_____
C
peak time of C : 15.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.32 0.5 7.68 1.12 1.27 0.845 0.456 -0.277 0.33 16 49.99 1178 -- --
113.42 0.496 7.68 1.1 1.27 0.828 0.406 -- 0.329 16 52 1171 -- --
113.89 0.497 7.68 1.11 1.27 0.831 -- -0.13 0.331 16 51 1183 -- --
113.91 0.497 7.68 1.1 1.27 0.82 -- -- 0.328 15.9 51 1187 -- --
178 0.625 7.69 1.03 -- -1.22 -- -0.45 0.248 -- 51.56 1173 -- --
126.75 0.528 7.69 1.04 1.4 -- 0.432 -- 0.294 15.6 -- -- -- --
127.32 0.528 7.68 1.05 1.4 -- -- -- 0.297 15.6 -- -- -- --
178.39 0.625 7.69 1.02 -- -1.22 -- -- 0.247 -- 52 1176 -- --
142.77 0.557 7.69 -- 1.31 1 -- -- 0.333 15.6 81 1388 -- --
236.87 0.719 7.68 0.991 -- -- -- -- 0.259 -- -- -- -- --
156.37 0.585 7.71 -- 1.38 -- -- -- 0.18 15.6 -- -- -- --
203.8 0.667 7.72 -- -- -0.979 -- -- 0.0729 -- 68.39 1186 -- --
262.78 0.757 7.71 -- -- -- -- -- 0.149 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.65 wind 5.0 270 < th dose independent rect. 3 2
2 107.82 wind 3.0 90 < th dose independent rect. 3 5
4 108.03 temperature 10.0 90 > th dose dependent rect. 3 5
5 108.15 precipitation 0.1 270 < th dose independent rect. 3 2
6 108.15 precipitation 0.1 270 < th dose dependent rect. 3 2
7 108.19 humidity 50.0 270 > th dose dependent rect. 17 9
14 108.65 temperature 10.0 270 > th dose dependent rect. 3 2
16 108.70 temperature 10.0 10 > th dose dependent rect. 2 7
19 108.75 wind 9.0 90 < th dose dependent rect. 3 5
20 108.76 precipitation 0.1 90 < th dose independent rect. 3 5
21 108.76 precipitation 0.1 90 < th dose dependent rect. 3 5
28 108.93 wind 5.0 10 < th dose independent rect. 2 7
38 109.11 precipitation 0.1 270 < th dose independent rect. 10 23
39 109.11 precipitation 0.1 270 < th dose dependent rect. 10 23
40 109.12 humidity 90.0 720 > th dose dependent rect. 8 17
43 109.23 precipitation 0.1 10 < th dose independent rect. 2 7
45 109.23 precipitation 0.1 10 < th dose dependent rect. 2 7
47 109.24 wind 9.0 270 < th dose dependent rect. 3 2
48 109.26 temperature 15.0 270 > th dose independent rect. 13 17
50 109.29 radiation 1.0 270 < th dose dependent rect. 3 2
52 109.30 temperature 10.0 270 > th dose independent rect. 3 2
54 109.30 temperature 30.0 270 < th dose independent rect. 3 2
55 109.30 humidity 50.0 270 > th dose independent rect. 3 2
58 109.30 atmosphere 995.0 270 > th dose independent rect. 3 2
59 109.30 atmosphere 1010.0 270 < th dose independent rect. 3 2
61 109.30 radiation 20.0 270 < th dose independent rect. 3 2
64 109.30 temperature 10.0 270 > th dose independent rect. 5 22
65 109.31 radiation 40.0 270 < th dose dependent rect. 3 2
66 109.32 radiation 20.0 270 < th dose dependent rect. 3 2
69 109.34 radiation 1.0 270 < th dose independent rect. 3 2
75 109.37 wind 9.0 270 < th dose independent rect. 5 22
80 109.45 radiation 30.0 90 < th dose independent rect. 3 6
81 109.45 temperature 15.0 270 > th dose independent rect. 10 22
83 109.47 temperature 10.0 90 > th dose independent rect. 3 5
85 109.47 temperature 30.0 90 < th dose independent rect. 3 5
86 109.47 humidity 50.0 90 > th dose independent rect. 3 5
88 109.47 atmosphere 995.0 90 > th dose independent rect. 3 5
89 109.47 atmosphere 1015.0 90 < th dose independent rect. 3 5
92 109.47 temperature 10.0 90 > th dose independent rect. 8 19
98 109.53 humidity 80.0 1440 > th dose dependent rect. 11 4
99 109.54 humidity 90.0 720 > th dose dependent rect. 22 2
103 109.59 wind 9.0 90 < th dose independent rect. 8 19
109 109.63 temperature 15.0 90 > th dose independent rect. 13 19
112 109.67 humidity 80.0 1440 > th dose dependent rect. 12 2
119 109.80 wind 7.0 10 < th dose dependent rect. 4 5
124 109.84 atmosphere 995.0 90 > th dose independent rect. 8 19
125 109.84 radiation 1.0 270 < th dose dependent rect. 5 21
134 109.90 radiation 40.0 10 < th dose independent rect. 4 16
158 110.09 temperature 10.0 90 > th dose dependent rect. 13 19
160 110.11 radiation 10.0 270 < th dose independent rect. 1 6
161 110.11 temperature 10.0 10 > th dose dependent rect. 14 19
168 110.15 precipitation 0.1 270 < th dose independent rect. 13 17
169 110.15 precipitation 0.1 270 < th dose dependent rect. 13 17
172 110.18 radiation 40.0 90 < th dose independent rect. 3 16
186 110.24 wind 1.0 270 > th dose independent rect. 3 2
203 110.29 humidity 50.0 270 > th dose dependent rect. 3 2
211 110.34 temperature 15.0 10 > th dose independent rect. 14 19
214 110.36 humidity 50.0 90 > th dose independent rect. 8 19
226 110.42 radiation 1.0 270 > th dose dependent rect. 9 1
228 110.43 humidity 50.0 270 > th dose independent rect. 6 19
238 110.48 radiation 10.0 270 < th dose dependent rect. 1 6
239 110.49 humidity 50.0 270 > th dose independent rect. 5 21
265 110.63 temperature 10.0 10 > th dose independent rect. 2 7
267 110.63 temperature 30.0 10 < th dose independent rect. 2 7
268 110.63 humidity 50.0 10 > th dose independent rect. 2 7
270 110.63 atmosphere 995.0 10 > th dose independent rect. 2 7
271 110.63 atmosphere 1015.0 10 < th dose independent rect. 2 7
273 110.63 temperature 10.0 10 > th dose independent rect. 9 17
291 110.64 atmosphere 1010.0 270 < th dose independent rect. 1 5
293 110.65 wind 9.0 270 < th dose independent rect. 6 19
294 110.65 precipitation 0.1 90 < th dose independent rect. 8 19
297 110.65 precipitation 0.1 90 < th dose dependent rect. 8 19
328 110.71 radiation 40.0 10 < th dose independent rect. 2 7
342 110.73 temperature 10.0 270 > th dose independent rect. 6 19
346 110.74 temperature 10.0 10 > th dose independent rect. 4 5
348 110.74 temperature 30.0 10 < th dose independent rect. 4 5
349 110.74 humidity 50.0 10 > th dose independent rect. 4 5
351 110.74 atmosphere 995.0 10 > th dose independent rect. 4 5
352 110.74 atmosphere 1015.0 10 < th dose independent rect. 4 5
353 110.74 temperature 10.0 10 > th dose independent rect. 9 19
356 110.75 humidity 80.0 1440 > th dose independent rect. 12 2
358 110.76 radiation 40.0 270 < th dose dependent rect. 1 5
361 110.78 radiation 40.0 10 < th dose independent rect. 4 5
377 110.83 precipitation 0.1 10 < th dose independent rect. 9 17
379 110.83 precipitation 0.1 10 < th dose dependent rect. 9 17
384 110.85 temperature 15.0 270 > th dose independent rect. 11 10
421 110.90 wind 1.0 270 > th dose independent rect. 1 5
422 110.90 wind 9.0 10 < th dose independent rect. 9 17
423 110.90 atmosphere 995.0 10 > th dose independent rect. 9 19
425 110.91 wind 9.0 10 < th dose independent rect. 9 19
427 110.91 radiation 40.0 90 < th dose dependent rect. 3 6
432 110.93 radiation 40.0 90 < th dose independent rect. 13 19
445 110.97 radiation 10.0 1440 > th dose independent rect. 12 1
453 110.99 atmosphere 995.0 10 > th dose independent rect. 9 17
461 111.01 temperature 10.0 1440 > th dose independent rect. 3 7
464 111.01 atmosphere 995.0 1440 > th dose independent rect. 3 7
466 111.01 temperature 10.0 1440 > th dose independent rect. 10 17
470 111.01 atmosphere 1015.0 270 < th dose dependent rect. 3 2
472 111.01 radiation 40.0 90 < th dose dependent rect. 3 16
480 111.04 radiation 1.0 1440 < th dose independent rect. 8 5
482 111.04 temperature 10.0 270 > th dose dependent rect. 9 1
483 111.04 radiation 1.0 1440 < th dose dependent rect. 8 5
493 111.07 wind 9.0 10 < th dose dependent rect. 14 19
511 111.08 radiation 20.0 270 < th dose dependent rect. 1 13
519 111.10 atmosphere 1010.0 270 < th dose independent rect. 13 17
520 111.10 humidity 90.0 720 > th dose dependent sin 19 NA
541 111.14 radiation 1.0 270 < th dose independent rect. 5 21
542 111.14 radiation 40.0 10 < th dose independent rect. 12 21
546 111.15 atmosphere 995.0 270 > th dose independent rect. 6 19
551 111.17 humidity 90.0 720 < th dose dependent rect. 19 3
554 111.18 atmosphere 1015.0 90 < th dose independent rect. 13 19
568 111.23 radiation 40.0 270 < th dose independent rect. 11 19
575 111.25 humidity 80.0 1440 > th dose independent rect. 11 4
597 111.28 precipitation 0.1 90 < th dose independent rect. 13 19
601 111.28 radiation 40.0 90 < th dose dependent rect. 3 8
605 111.28 precipitation 0.1 90 < th dose dependent rect. 13 19
618 111.31 radiation 10.0 1440 > th dose independent rect. 11 4
627 111.32 precipitation 0.1 270 < th dose independent rect. 11 9
630 111.32 precipitation 0.1 270 < th dose dependent rect. 11 9
631 111.32 radiation 40.0 90 < th dose dependent rect. 3 12
632 111.32 temperature 10.0 270 > th dose dependent rect. 11 20
660 111.37 humidity 50.0 270 > th dose independent rect. 6 7
673 111.39 radiation 1.0 270 < th dose dependent rect. 12 14
675 111.40 radiation 10.0 10 > th dose independent rect. 9 5
684 111.42 atmosphere 1000.0 270 > th dose dependent rect. 2 3
688 111.43 humidity 50.0 90 > th dose independent rect. 8 5
710 111.45 atmosphere 995.0 270 > th dose independent rect. 5 21
715 111.46 humidity 50.0 10 > th dose independent rect. 9 19
729 111.51 humidity 80.0 1440 < th dose independent rect. 12 2
733 111.51 radiation 40.0 90 < th dose dependent sin 4 NA
741 111.53 temperature 30.0 270 < th dose independent rect. 17 9
745 111.53 wind 9.0 90 < th dose dependent rect. 15 17
747 111.54 atmosphere 1015.0 1440 < th dose independent rect. 3 7
754 111.55 humidity 50.0 270 > th dose independent rect. 9 1
758 111.56 humidity 90.0 720 < th dose independent rect. 20 2
759 111.56 atmosphere 1000.0 270 > th dose independent rect. 18 8
761 111.56 radiation 1.0 270 < th dose dependent rect. 17 9
775 111.60 temperature 10.0 90 > th dose dependent rect. 8 5
782 111.62 atmosphere 995.0 270 > th dose dependent rect. 18 7
814 111.70 radiation 1.0 270 < th dose independent rect. 17 9
817 111.71 radiation 10.0 90 > th dose independent rect. 8 5
819 111.71 precipitation 0.1 10 < th dose independent rect. 14 19
822 111.71 precipitation 0.1 10 < th dose dependent rect. 14 19
840 111.74 temperature 10.0 270 > th dose independent rect. 6 7
841 111.74 atmosphere 995.0 270 > th dose independent rect. 6 7
842 111.74 atmosphere 1015.0 270 < th dose independent rect. 6 7
858 111.76 atmosphere 1015.0 90 < th dose dependent rect. 3 5
860 111.77 precipitation 0.1 270 < th dose independent rect. 6 7
864 111.77 precipitation 0.1 270 < th dose dependent rect. 6 7
870 111.78 humidity 70.0 270 > th dose independent rect. 17 9
874 111.78 atmosphere 995.0 90 > th dose dependent rect. 8 19
895 111.81 atmosphere 1015.0 10 < th dose independent rect. 14 19
898 111.81 radiation 40.0 10 < th dose dependent rect. 4 16
900 111.82 temperature 10.0 270 > th dose independent rect. 9 1
901 111.82 atmosphere 995.0 270 > th dose independent rect. 9 1
902 111.82 atmosphere 1015.0 270 < th dose independent rect. 9 1
911 111.83 wind 9.0 270 < th dose independent rect. 6 7
912 111.83 radiation 1.0 270 < th dose independent rect. 12 14
914 111.84 precipitation 0.1 270 < th dose independent rect. 9 1
916 111.84 radiation 1.0 1440 > th dose independent rect. 8 7
920 111.84 precipitation 0.1 270 < th dose dependent rect. 9 1
932 111.86 humidity 50.0 90 > th dose dependent rect. 3 5
946 111.88 radiation 1.0 1440 < th dose dependent rect. 8 9
948 111.89 wind 9.0 270 < th dose independent rect. 9 1
949 111.89 wind 1.0 270 > th dose independent rect. 11 9
951 111.90 radiation 1.0 1440 > th dose independent rect. 8 2
955 111.90 radiation 10.0 1440 < th dose dependent rect. 12 4
966 111.92 radiation 1.0 90 > th dose dependent rect. 8 5
971 111.94 precipitation 0.1 270 < th dose independent rect. 2 16
976 111.94 precipitation 0.1 270 < th dose dependent rect. 2 16
978 111.95 wind 1.0 90 > th dose independent rect. 8 5
994 111.97 temperature 10.0 90 > th dose independent rect. 8 5
995 111.97 atmosphere 995.0 90 > th dose independent rect. 8 5
996 111.97 atmosphere 1015.0 90 < th dose independent rect. 8 5
997 111.97 humidity 50.0 270 > th dose independent rect. 20 15