Os02g0779500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0779500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.08 | 0.431 | 8.77 | -0.632 | 0.102 | -1.02 | -0.473 | -0.166 | -0.168 | 2.41 | 21.21 | 1317 | -- | -- |
| 83.91 | 0.427 | 8.76 | -0.58 | 0.157 | -1.05 | -0.352 | -- | -0.156 | 0.986 | 21.77 | 1247 | -- | -- |
| 83.95 | 0.427 | 8.77 | -0.603 | 0.203 | -1.07 | -- | -0.0496 | -0.164 | 23.3 | 21.77 | 1196 | -- | -- |
| 83.91 | 0.427 | 8.77 | -0.589 | 0.204 | -1.06 | -- | -- | -0.171 | 23.3 | 22.42 | 1197 | -- | -- |
| 85.37 | 0.43 | 8.75 | -0.502 | -- | -0.999 | -- | 0.282 | -0.151 | -- | 22.62 | 1339 | -- | -- |
| 118.28 | 0.51 | 8.81 | -0.933 | 0.0715 | -- | 0.818 | -- | -0.39 | 16.6 | -- | -- | -- | -- |
| 119.9 | 0.513 | 8.81 | -0.929 | 0.0942 | -- | -- | -- | -0.386 | 18.8 | -- | -- | -- | -- |
| 85.41 | 0.43 | 8.76 | -0.586 | -- | -0.979 | -- | -- | -0.171 | -- | 22.4 | 1339 | -- | -- |
| 91.92 | 0.447 | 8.74 | -- | 0.216 | -1.24 | -- | -- | -0.0697 | 23.2 | 20.7 | 1200 | -- | -- |
| 120.37 | 0.513 | 8.81 | -0.931 | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
| 142.66 | 0.559 | 8.79 | -- | 0.106 | -- | -- | -- | -0.282 | 18.2 | -- | -- | -- | -- |
| 93.23 | 0.45 | 8.74 | -- | -- | -1.16 | -- | -- | -0.0577 | -- | 20.92 | 1359 | -- | -- |
| 143.24 | 0.559 | 8.79 | -- | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 21 | 82.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 29 | 82.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 41 | 82.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 55 | 82.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 65 | 83.13 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 81 | 83.53 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 96 | 83.73 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 125 | 84.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 142 | 84.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 171 | 84.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 189 | 84.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 211 | 84.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 278 | 84.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 22 |
| 288 | 84.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 289 | 84.91 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 296 | 84.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 297 | 84.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 302 | 84.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 313 | 84.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 315 | 84.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 318 | 84.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 364 | 85.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 396 | 85.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 488 | 85.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 516 | 85.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 535 | 85.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 593 | 85.67 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 611 | 85.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 670 | 85.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 703 | 85.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 874 | 86.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 920 | 86.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 922 | 86.12 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |