Os02g0777800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 induced kinase 1.
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Os02g0777800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 induced kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.47 | 0.578 | 12.1 | -1.13 | 1.23 | 1.95 | -1.67 | 2.72 | 0.214 | 2.39 | 0.899 | 14347 | -- | -- |
| 165.95 | 0.6 | 12.1 | -1.13 | 1.46 | 1.53 | -1.46 | -- | 0.185 | 2.25 | 1.626 | 14702 | -- | -- |
| 155.85 | 0.581 | 12.1 | -1.26 | 1.55 | 1.96 | -- | 2.43 | 0.236 | 2.33 | 0.8501 | 14721 | -- | -- |
| 165.95 | 0.6 | 12.1 | -1.45 | 1.48 | 1.48 | -- | -- | 0.259 | 2.11 | 1.79 | 29189 | -- | -- |
| 260.12 | 0.755 | 12.1 | -0.981 | -- | -0.743 | -- | 0.992 | 0.587 | -- | 0.8501 | 14721 | -- | -- |
| 215.33 | 0.688 | 12.1 | -1.11 | 1.32 | -- | -1.46 | -- | 0.532 | 2.26 | -- | -- | -- | -- |
| 223.26 | 0.7 | 12.1 | -1.07 | 1.32 | -- | -- | -- | 0.54 | 2.23 | -- | -- | -- | -- |
| 250.02 | 0.736 | 12.2 | -2.71 | -- | 1.88 | -- | -- | -0.0148 | -- | 0.9009 | 42954 | -- | -- |
| 226.77 | 0.701 | 12.1 | -- | 1.46 | 1.36 | -- | -- | 0.289 | 2.16 | 2.459 | 27674 | -- | -- |
| 326.99 | 0.845 | 12.1 | -1.01 | -- | -- | -- | -- | 0.572 | -- | -- | -- | -- | -- |
| 253.39 | 0.745 | 12.1 | -- | 1.3 | -- | -- | -- | 0.66 | 2.22 | -- | -- | -- | -- |
| 289.23 | 0.795 | 12 | -- | -- | -0.761 | -- | -- | 0.727 | -- | 2.459 | 27674 | -- | -- |
| 354.1 | 0.878 | 12.1 | -- | -- | -- | -- | -- | 0.685 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 2 | 143.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 3 | 143.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 7 | 143.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 52 | 145.10 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 53 | 145.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 59 | 145.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 62 | 145.58 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 72 | 145.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 73 | 145.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 78 | 145.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 80 | 145.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 81 | 145.63 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 100 | 145.87 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 117 | 146.04 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 169 | 146.37 | radiation | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 172 | 146.39 | radiation | 1.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 231 | 146.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 248 | 146.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 251 | 146.76 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 287 | 147.24 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 292 | 147.30 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 341 | 147.57 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 343 | 147.57 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 374 | 147.75 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 417 | 148.01 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 425 | 148.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 521 | 148.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 522 | 148.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 524 | 148.45 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 529 | 148.46 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 538 | 148.53 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 586 | 148.77 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 617 | 148.91 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 645 | 148.97 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 654 | 148.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 698 | 149.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 723 | 149.05 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 724 | 149.06 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 741 | 149.09 | radiation | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 814 | 149.13 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 981 | 149.34 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 12 |