Os02g0775900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0775900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.63 | 0.714 | 8.75 | -0.37 | 1.67 | 1.39 | 3.46 | -3.09 | -0.273 | 19.6 | 21.78 | 10 | -- | -- |
| 255.81 | 0.745 | 8.66 | -0.265 | 1.55 | 1.75 | 3.64 | -- | -0.181 | 17.5 | 11.88 | 4 | -- | -- |
| 255.29 | 0.744 | 8.78 | -0.407 | 1.81 | 1.2 | -- | -1.96 | -0.261 | 20 | 24.47 | 14 | -- | -- |
| 271.45 | 0.767 | 8.75 | -0.366 | 1.78 | 1.18 | -- | -- | -0.271 | 19.9 | 20.57 | 5 | -- | -- |
| 375.39 | 0.902 | 8.71 | -0.488 | -- | 1.8 | -- | -1.55 | -0.271 | -- | 11.53 | 9 | -- | -- |
| 297.5 | 0.809 | 8.78 | -0.409 | 2.57 | -- | -0.326 | -- | -0.285 | 21.6 | -- | -- | -- | -- |
| 297.87 | 0.808 | 8.78 | -0.396 | 2.57 | -- | -- | -- | -0.284 | 21.5 | -- | -- | -- | -- |
| 374.76 | 0.902 | 8.7 | -0.462 | -- | 1.77 | -- | -- | -0.271 | -- | 7.184 | 3 | -- | -- |
| 274.87 | 0.772 | 8.74 | -- | 1.76 | 1.19 | -- | -- | -0.241 | 19.9 | 20.99 | 6 | -- | -- |
| 688.12 | 1.23 | 8.71 | -0.378 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 302.01 | 0.813 | 8.77 | -- | 2.57 | -- | -- | -- | -0.239 | 21.5 | -- | -- | -- | -- |
| 376.69 | 0.904 | 8.68 | -- | -- | 1.79 | -- | -- | -0.195 | -- | 6.998 | 2 | -- | -- |
| 691.89 | 1.23 | 8.7 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.15 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 2 | 230.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 5 | 230.83 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 231.08 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 8 | 231.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 231.23 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 11 | 231.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 13 |
| 19 | 231.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 20 | 232.03 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 22 | 232.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 47 | 233.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 233.83 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 72 | 234.52 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 80 | 234.67 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 81 | 234.69 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 87 | 234.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 91 | 235.09 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 103 | 235.38 | humidity | 70 | 10 | > th | dose independent | sin | 6 | NA |
| 111 | 235.57 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 15 |
| 112 | 235.58 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 15 |
| 122 | 235.76 | radiation | 1 | 30 | > th | dose independent | sin | 1 | NA |
| 127 | 235.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 130 | 235.88 | wind | 1 | 90 | > th | dose independent | rect. | 1 | 8 |
| 140 | 236.03 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 143 | 236.08 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 166 | 236.51 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 7 |
| 169 | 236.53 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 200 | 236.95 | humidity | 80 | 30 | < th | dose independent | rect. | 9 | 7 |
| 202 | 236.97 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 13 |
| 222 | 237.26 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 235 | 237.33 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 16 |
| 248 | 237.42 | radiation | 40 | 10 | < th | dose dependent | sin | 5 | NA |
| 274 | 237.69 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 10 |
| 287 | 237.78 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 322 | 238.08 | radiation | 40 | 270 | < th | dose independent | rect. | 23 | 10 |
| 351 | 238.24 | radiation | 40 | 720 | < th | dose independent | rect. | 19 | 16 |
| 358 | 238.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 376 | 238.42 | radiation | 40 | 90 | < th | dose independent | rect. | 1 | 10 |
| 396 | 238.60 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 5 |
| 416 | 238.73 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 13 |
| 433 | 238.83 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 450 | 239.00 | humidity | 80 | 90 | < th | dose independent | sin | 2 | NA |
| 458 | 239.07 | humidity | 70 | 270 | > th | dose independent | rect. | 23 | 9 |
| 463 | 239.10 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 18 |
| 478 | 239.18 | humidity | 90 | 10 | < th | dose dependent | sin | 1 | NA |
| 496 | 239.26 | humidity | 50 | 270 | > th | dose independent | rect. | 8 | 15 |
| 522 | 239.41 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 533 | 239.47 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 548 | 239.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 564 | 239.69 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 9 |
| 570 | 239.75 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 587 | 239.88 | humidity | 50 | 90 | > th | dose dependent | sin | 6 | NA |
| 617 | 240.03 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 620 | 240.05 | humidity | 50 | 10 | > th | dose dependent | sin | 5 | NA |
| 634 | 240.14 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 3 |
| 643 | 240.18 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 654 | 240.24 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 17 |
| 679 | 240.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 742 | 240.72 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 10 |
| 746 | 240.76 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 13 |
| 751 | 240.78 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 9 |
| 822 | 241.11 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 9 |
| 823 | 241.13 | radiation | 40 | 720 | < th | dose independent | sin | 8 | NA |
| 867 | 241.37 | temperature | 15 | 10 | > th | dose dependent | sin | 19 | NA |
| 920 | 241.67 | humidity | 50 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 924 | 241.70 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 8 |
| 939 | 241.74 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 940 | 241.75 | radiation | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 948 | 241.79 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 10 | 15 |
| 966 | 241.86 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 23 | 9 |