Os02g0775300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0775300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.15 | 0.428 | 12 | -0.726 | 1.07 | -1.18 | 1.01 | -1.08 | -0.157 | 17.7 | 26.6 | 1295 | -- | -- |
| 83.4 | 0.425 | 12 | -0.485 | 1.1 | -1.27 | 1.06 | -- | -0.124 | 17.7 | 27.08 | 1297 | -- | -- |
| 85.62 | 0.431 | 12 | -0.746 | 1.08 | -1.18 | -- | -1.16 | -0.158 | 17.7 | 26.67 | 1295 | -- | -- |
| 85.91 | 0.432 | 12 | -0.472 | 1.09 | -1.29 | -- | -- | -0.126 | 17.7 | 26.96 | 1297 | -- | -- |
| 145.25 | 0.561 | 12 | -0.934 | -- | -1.21 | -- | -1.86 | -0.189 | -- | 26.02 | 1300 | -- | -- |
| 154.71 | 0.583 | 12 | -0.881 | 1.19 | -- | 1.31 | -- | -0.138 | 17.2 | -- | -- | -- | -- |
| 159 | 0.59 | 12 | -0.881 | 1.19 | -- | -- | -- | -0.132 | 17.2 | -- | -- | -- | -- |
| 146.14 | 0.563 | 11.9 | -0.456 | -- | -1.41 | -- | -- | -0.0882 | -- | 26.23 | 1299 | -- | -- |
| 91.35 | 0.445 | 11.9 | -- | 1.1 | -1.38 | -- | -- | -0.0185 | 17.7 | 26.16 | 1307 | -- | -- |
| 233.68 | 0.714 | 11.9 | -0.923 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 179.45 | 0.627 | 11.9 | -- | 1.21 | -- | -- | -- | -0.0336 | 17.2 | -- | -- | -- | -- |
| 150.92 | 0.572 | 11.9 | -- | -- | -1.56 | -- | -- | 0.0467 | -- | 25.33 | 1297 | -- | -- |
| 256.15 | 0.747 | 11.9 | -- | -- | -- | -- | -- | -0.0594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 3 | 83.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 4 | 83.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 44 | 84.82 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 50 | 84.95 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 56 | 85.09 | temperature | 25 | 1440 | > th | dose dependent | sin | 10 | NA |
| 70 | 85.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 87 | 85.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 94 | 85.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 95 | 85.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 98 | 85.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 99 | 85.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 114 | 85.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 117 | 85.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 119 | 85.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 121 | 85.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 138 | 85.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 142 | 85.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 147 | 85.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 148 | 85.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 151 | 85.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 163 | 85.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 169 | 85.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 173 | 85.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 181 | 85.82 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 231 | 85.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 236 | 85.93 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 246 | 85.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 251 | 85.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 22 |
| 264 | 85.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 322 | 86.01 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 333 | 86.07 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 351 | 86.09 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 362 | 86.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 381 | 86.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 387 | 86.17 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 410 | 86.25 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 411 | 86.25 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 414 | 86.26 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 455 | 86.35 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 550 | 86.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 553 | 86.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 577 | 86.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 621 | 86.60 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 671 | 86.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 687 | 86.80 | temperature | 30 | 1440 | > th | dose dependent | sin | 0 | NA |
| 702 | 86.84 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 881 | 86.95 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 884 | 86.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 886 | 86.96 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 5 |