Os02g0769900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0769900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.92 | 0.282 | 10.3 | 1.71 | 1.44 | -0.588 | -0.834 | -0.576 | -0.15 | 17.9 | 70 | 368 | -- | -- |
| 36.39 | 0.281 | 10.3 | 1.67 | 1.43 | -0.616 | -0.583 | -- | -0.163 | 18 | 71 | 367 | -- | -- |
| 37.16 | 0.284 | 10.3 | 1.69 | 1.45 | -0.585 | -- | -0.102 | -0.16 | 17.9 | 70.48 | 367 | -- | -- |
| 37.18 | 0.284 | 10.3 | 1.68 | 1.45 | -0.594 | -- | -- | -0.163 | 18 | 70.68 | 367 | -- | -- |
| 96.02 | 0.456 | 10.3 | 1.37 | -- | -1.25 | -- | 1.14 | -0.119 | -- | 75 | 436 | -- | -- |
| 45.27 | 0.315 | 10.3 | 1.75 | 1.85 | -- | -0.333 | -- | -0.124 | 17.7 | -- | -- | -- | -- |
| 45.54 | 0.316 | 10.3 | 1.76 | 1.85 | -- | -- | -- | -0.125 | 17.7 | -- | -- | -- | -- |
| 80.68 | 0.418 | 10.3 | 1.64 | -- | -1.6 | -- | -- | -0.253 | -- | 75 | 440 | -- | -- |
| 110.94 | 0.491 | 10.3 | -- | 1.22 | -0.814 | -- | -- | -0.369 | 18.1 | 70.06 | 402 | -- | -- |
| 223.13 | 0.698 | 10.2 | 1.7 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 126.87 | 0.527 | 10.3 | -- | 1.82 | -- | -- | -- | -0.321 | 17.8 | -- | -- | -- | -- |
| 147.41 | 0.565 | 10.3 | -- | -- | -1.75 | -- | -- | -0.42 | -- | 72.11 | 441 | -- | -- |
| 299.22 | 0.807 | 10.3 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.85 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 2 | 34.89 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 15 |
| 20 | 35.63 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 19 |
| 22 | 35.65 | humidity | 70 | 270 | > th | dose independent | sin | 21 | NA |
| 33 | 35.77 | humidity | 70 | 270 | < th | dose independent | sin | 21 | NA |
| 43 | 35.92 | humidity | 70 | 270 | < th | dose independent | rect. | 10 | 9 |
| 84 | 36.10 | humidity | 70 | 270 | < th | dose independent | rect. | 12 | 23 |
| 92 | 36.21 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 22 |
| 110 | 36.38 | humidity | 60 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 113 | 36.40 | humidity | 60 | 270 | > th | dose dependent | sin | 21 | NA |
| 115 | 36.42 | humidity | 90 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 167 | 36.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 171 | 36.65 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 197 | 36.70 | humidity | 70 | 270 | < th | dose independent | rect. | 19 | 23 |
| 198 | 36.71 | humidity | 70 | 270 | > th | dose independent | no | NA | NA |
| 202 | 36.72 | humidity | 70 | 270 | < th | dose independent | no | NA | NA |
| 307 | 36.92 | humidity | 90 | 270 | < th | dose dependent | sin | 22 | NA |
| 354 | 37.13 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 23 |
| 381 | 37.21 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 385 | 37.21 | humidity | 80 | 270 | < th | dose dependent | rect. | 10 | 18 |
| 435 | 37.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 459 | 37.36 | humidity | 80 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 511 | 37.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 636 | 37.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 650 | 37.66 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 680 | 37.68 | humidity | 80 | 270 | < th | dose dependent | no | NA | NA |
| 730 | 37.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 775 | 37.78 | humidity | 80 | 720 | < th | dose dependent | sin | 3 | NA |
| 807 | 37.81 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 22 |
| 814 | 37.82 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 845 | 37.85 | radiation | 40 | 270 | < th | dose independent | rect. | 17 | 21 |
| 853 | 37.86 | humidity | 70 | 270 | > th | dose independent | rect. | 21 | 23 |
| 965 | 37.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 966 | 37.98 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 1000 | 38.00 | radiation | 20 | 270 | < th | dose dependent | sin | 18 | NA |