Os02g0769800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.
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Os02g0769800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.17 | 0.461 | 9.4 | -0.099 | 1.64 | 1.2 | 0.329 | -1.13 | 0.128 | 22.9 | 23.64 | 36 | -- | -- |
| 98 | 0.461 | 9.43 | -0.106 | 1.73 | 1.15 | -0.623 | -- | 0.0764 | 23.1 | 27.63 | 18 | -- | -- |
| 96.29 | 0.457 | 9.4 | -0.108 | 1.65 | 1.19 | -- | -0.877 | 0.126 | 22.9 | 23.92 | 37 | -- | -- |
| 99.57 | 0.465 | 9.4 | -0.0693 | 1.64 | 1.17 | -- | -- | 0.11 | 22.9 | 23.23 | 20 | -- | -- |
| 120.02 | 0.51 | 9.38 | -0.164 | -- | 2.29 | -- | -0.777 | 0.099 | -- | 10.71 | 10 | -- | -- |
| 121.63 | 0.517 | 9.44 | -0.154 | 2.76 | -- | -0.644 | -- | 0.0419 | 23.4 | -- | -- | -- | -- |
| 123.41 | 0.52 | 9.44 | -0.127 | 2.76 | -- | -- | -- | 0.0445 | 23.4 | -- | -- | -- | -- |
| 123.38 | 0.517 | 9.36 | -0.154 | -- | 2.22 | -- | -- | 0.126 | -- | 9.404 | 9 | -- | -- |
| 99.74 | 0.465 | 9.4 | -- | 1.63 | 1.18 | -- | -- | 0.112 | 22.9 | 23.26 | 20 | -- | -- |
| 600.75 | 1.15 | 9.37 | -0.055 | -- | -- | -- | -- | 0.0729 | -- | -- | -- | -- | -- |
| 123.84 | 0.521 | 9.43 | -- | 2.76 | -- | -- | -- | 0.0587 | 23.4 | -- | -- | -- | -- |
| 124 | 0.519 | 9.35 | -- | -- | 2.22 | -- | -- | 0.143 | -- | 9.379 | 9 | -- | -- |
| 600.83 | 1.14 | 9.37 | -- | -- | -- | -- | -- | 0.079 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.40 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 10 | 92.27 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 19 |
| 29 | 93.82 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 33 | 93.98 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 34 | 94.07 | radiation | 1 | 30 | > th | dose independent | sin | 0 | NA |
| 50 | 94.81 | radiation | 1 | 30 | < th | dose independent | sin | 1 | NA |
| 61 | 95.13 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 19 |
| 67 | 95.32 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 81 | 95.58 | radiation | 1 | 10 | < th | dose dependent | sin | 0 | NA |
| 123 | 96.24 | humidity | 70 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 171 | 96.83 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 173 | 96.85 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 175 | 96.89 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 176 | 96.90 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 205 | 97.39 | radiation | 1 | 30 | < th | dose independent | rect. | 1 | 19 |
| 217 | 97.49 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 247 | 97.81 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 278 | 98.04 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 305 | 98.35 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 12 |
| 313 | 98.39 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 19 |
| 325 | 98.50 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 19 |
| 337 | 98.62 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 341 | 98.66 | radiation | 30 | 30 | < th | dose dependent | rect. | 8 | 12 |
| 349 | 98.72 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 368 | 98.83 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 421 | 99.10 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 425 | 99.13 | radiation | 40 | 90 | < th | dose independent | rect. | 1 | 19 |
| 434 | 99.18 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 21 |
| 470 | 99.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 516 | 99.56 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 21 |
| 517 | 99.56 | humidity | 70 | 10 | > th | dose dependent | sin | 0 | NA |
| 535 | 99.60 | radiation | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 587 | 99.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 589 | 99.78 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 627 | 99.91 | humidity | 90 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 664 | 100.02 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 671 | 100.03 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 678 | 100.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 682 | 100.07 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 21 |
| 688 | 100.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 5 |
| 695 | 100.10 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 713 | 100.18 | humidity | 90 | 10 | < th | dose dependent | sin | 1 | NA |
| 755 | 100.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 764 | 100.33 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 774 | 100.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 794 | 100.42 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 807 | 100.45 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 808 | 100.45 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 900 | 100.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 901 | 100.68 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 907 | 100.69 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 5 |
| 930 | 100.74 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 931 | 100.75 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 20 |
| 953 | 100.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 969 | 100.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |