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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0769600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.52 (0.0477) R2 : 0.707
β1 : -4.76 (0.173) R2dD : 0.523 R2D : 0.423
β2 : 0.718 (0.136) R2dC : 0.0232 R2C : 0.0134
β3 : 0.763 (0.117) R2dE : 0.0436 R2E : 0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.27 (0.113) R2dN8 : 0.14 R2N8 : 0.0726
σ : 0.868
deviance : 347.55
__
_____
C
peak time of C : 7.23
E
wheather : temperature
threshold : 24.95
memory length : 290
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.27 0.874 5.51 -4.75 0.714 0.767 0.714 -0.0727 -1.25 7.31 24.96 291 -- --
346.28 0.867 5.51 -4.77 0.715 0.764 0.691 -- -1.26 7.31 24.95 290 -- --
347.5 0.868 5.52 -4.78 0.715 0.757 -- 0.113 -1.28 7.24 24.9 290 -- --
347.55 0.868 5.52 -4.76 0.718 0.763 -- -- -1.27 7.23 24.95 290 -- --
364.65 0.889 5.51 -4.64 -- 1.13 -- 0.0193 -1.13 -- 25.1 345 -- --
374.34 0.907 5.59 -4.99 1.17 -- 0.802 -- -1.63 6.4 -- -- -- --
375.93 0.908 5.59 -4.98 1.18 -- -- -- -1.63 6.36 -- -- -- --
364.6 0.889 5.5 -4.65 -- 1.12 -- -- -1.13 -- 25.1 345 -- --
917.39 1.41 5.4 -- 0.794 1.23 -- -- -0.742 8.01 24.3 339 -- --
448.08 0.989 5.61 -4.95 -- -- -- -- -1.61 -- -- -- -- --
1030.62 1.5 5.46 -- 1.11 -- -- -- -1.08 6.61 -- -- -- --
916.98 1.41 5.33 -- -- 1.63 -- -- -0.359 -- 24.71 352 -- --
1095.22 1.54 5.49 -- -- -- -- -- -1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.73 radiation 30 43200 > th dose dependent rect. 15 1
2 331.91 temperature 15 14400 > th dose independent rect. 2 1
3 331.97 temperature 15 14400 > th dose independent rect. 24 1
19 332.24 temperature 15 14400 < th dose independent rect. 24 3
20 332.41 temperature 15 14400 > th dose independent rect. 24 3
21 332.46 temperature 15 14400 < th dose independent rect. 2 1
26 333.15 temperature 15 14400 > th dose independent rect. 22 5
38 333.90 humidity 50 43200 < th dose dependent rect. 9 1
43 334.12 temperature 15 14400 < th dose independent rect. 24 12
47 334.23 temperature 15 14400 < th dose independent rect. 22 14
51 334.26 radiation 10 43200 > th dose dependent rect. 17 1
103 334.64 temperature 25 270 < th dose independent rect. 14 19
130 334.73 temperature 15 14400 < th dose independent sin 4 NA
208 335.30 humidity 70 43200 < th dose independent rect. 1 6
211 335.30 temperature 15 14400 > th dose independent rect. 7 21
221 335.35 humidity 70 43200 > th dose independent rect. 1 6
228 335.37 temperature 15 14400 < th dose independent rect. 24 23
242 335.48 temperature 15 14400 < th dose independent no NA NA
246 335.49 temperature 15 14400 < th dose independent rect. 7 23
250 335.53 temperature 15 14400 < th dose independent rect. 5 6
262 335.58 temperature 15 14400 > th dose independent rect. 21 20
264 335.59 radiation 20 43200 < th dose independent rect. 21 9
268 335.60 humidity 50 43200 < th dose dependent rect. 3 8
276 335.61 temperature 15 14400 < th dose independent rect. 4 23
284 335.65 temperature 15 14400 > th dose independent rect. 21 18
288 335.67 temperature 15 14400 > th dose independent rect. 21 16
295 335.74 temperature 15 14400 < th dose independent rect. 4 8
306 335.78 temperature 15 14400 > th dose independent rect. 11 17
366 335.94 humidity 50 43200 < th dose dependent rect. 19 16
372 335.97 wind 1 14400 < th dose dependent rect. 1 5
378 336.00 humidity 50 43200 < th dose dependent rect. 8 3
387 336.05 temperature 15 14400 > th dose independent rect. 19 18
404 336.11 temperature 15 14400 > th dose independent rect. 16 21
421 336.18 temperature 15 14400 > th dose independent rect. 24 23
430 336.21 temperature 20 14400 < th dose dependent rect. 22 1
438 336.23 humidity 70 43200 < th dose dependent rect. 24 8
449 336.29 temperature 15 14400 > th dose independent rect. 24 17
452 336.31 temperature 15 14400 < th dose independent rect. 5 3
465 336.35 temperature 15 14400 > th dose independent no NA NA
483 336.42 temperature 20 14400 < th dose dependent rect. 18 6
485 336.43 temperature 15 14400 > th dose independent sin 1 NA
496 336.48 temperature 15 14400 > th dose independent sin 14 NA
503 336.52 radiation 40 43200 < th dose independent rect. 15 1
508 336.55 temperature 15 14400 > th dose independent rect. 5 10
530 336.63 temperature 15 14400 > th dose independent rect. 2 23
545 336.69 radiation 40 43200 < th dose independent rect. 15 14
550 336.71 humidity 50 43200 < th dose dependent rect. 17 18
573 336.79 radiation 40 43200 < th dose independent rect. 15 11
575 336.80 temperature 15 14400 > th dose independent rect. 6 5
587 336.84 radiation 40 43200 < th dose independent rect. 15 7
601 336.92 temperature 20 14400 < th dose dependent rect. 14 10
608 336.95 radiation 20 43200 < th dose independent rect. 17 1
609 336.95 radiation 20 43200 < th dose independent rect. 17 11
619 336.98 humidity 60 43200 < th dose independent rect. 23 9
627 337.02 temperature 15 14400 < th dose independent rect. 8 2
666 337.15 radiation 20 43200 < th dose dependent rect. 17 12
667 337.16 radiation 40 43200 > th dose independent rect. 7 1
683 337.16 radiation 40 43200 > th dose dependent rect. 7 1
701 337.17 humidity 70 43200 > th dose independent rect. 20 11
707 337.19 radiation 20 43200 < th dose independent rect. 17 9
715 337.21 radiation 20 43200 < th dose dependent rect. 17 2
724 337.24 radiation 20 43200 < th dose independent rect. 17 7
732 337.27 radiation 20 43200 < th dose dependent rect. 17 7
735 337.28 radiation 20 43200 < th dose dependent rect. 17 9
737 337.29 radiation 20 43200 < th dose dependent rect. 17 5
740 337.30 radiation 20 43200 < th dose independent rect. 17 5
763 337.41 humidity 70 43200 < th dose dependent rect. 5 2
895 338.06 temperature 20 14400 < th dose dependent sin 19 NA
898 338.08 humidity 60 43200 > th dose independent rect. 18 18
934 338.19 radiation 40 43200 < th dose independent rect. 15 18
969 338.37 humidity 60 43200 < th dose independent sin 9 NA
972 338.37 humidity 70 43200 < th dose dependent rect. 20 15
980 338.40 wind 3 1440 < th dose dependent rect. 1 1