Os02g0768800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0768800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.48 | 0.288 | 10.1 | -0.0872 | 0.558 | -0.041 | -0.747 | 2 | 0.0626 | 12.5 | 21.3 | 3172 | -- | -- |
| 39.94 | 0.294 | 10.2 | -0.126 | 0.561 | -0.674 | -0.739 | -- | 0.0445 | 12.6 | 14.5 | 47520 | -- | -- |
| 39.32 | 0.292 | 10.1 | -0.117 | 0.557 | -0.0706 | -- | 1.92 | 0.0478 | 12.4 | 21.4 | 2528 | -- | -- |
| 42.37 | 0.303 | 10.2 | -0.153 | 0.565 | -0.671 | -- | -- | 0.0328 | 12.4 | 14.57 | 47520 | -- | -- |
| 58.75 | 0.357 | 10.1 | -0.083 | -- | -0.168 | -- | 1.92 | 0.0877 | -- | 21.6 | 2513 | -- | -- |
| 46.01 | 0.318 | 10.2 | -0.711 | 0.569 | -- | -0.747 | -- | -0.13 | 12.5 | -- | -- | -- | -- |
| 48.4 | 0.326 | 10.2 | -0.74 | 0.571 | -- | -- | -- | -0.134 | 12.4 | -- | -- | -- | -- |
| 61.97 | 0.367 | 10.2 | -0.0885 | -- | -0.709 | -- | -- | 0.106 | -- | 19.8 | 21084 | -- | -- |
| 42.58 | 0.304 | 10.1 | -- | 0.564 | -0.772 | -- | -- | 0.0815 | 12.4 | 15.31 | 47520 | -- | -- |
| 68.89 | 0.388 | 10.2 | -0.759 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 62.83 | 0.371 | 10.2 | -- | 0.582 | -- | -- | -- | -0.0516 | 12.5 | -- | -- | -- | -- |
| 62.13 | 0.367 | 10.2 | -- | -- | -0.718 | -- | -- | 0.0978 | -- | 19.8 | 21187 | -- | -- |
| 84.1 | 0.428 | 10.2 | -- | -- | -- | -- | -- | -0.0591 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 5 | 33.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 11 | 33.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 12 | 33.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 19 | 33.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 25 | 33.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 31 | 33.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 59 | 34.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 69 | 34.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 78 | 34.05 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 92 | 34.08 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 96 | 34.08 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 111 | 34.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 162 | 34.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 280 | 34.32 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 287 | 34.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 360 | 34.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 375 | 34.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 405 | 34.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 431 | 34.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 433 | 34.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 461 | 34.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 465 | 34.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 478 | 34.75 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 506 | 34.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 564 | 34.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 566 | 34.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 575 | 35.00 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 601 | 35.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 604 | 35.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 605 | 35.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 684 | 35.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 843 | 35.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 844 | 35.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 858 | 35.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 865 | 35.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 881 | 35.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 887 | 35.69 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 920 | 35.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 23 |