Os02g0767900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin 2 family protein.
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Os02g0767900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin 2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.05 | 0.446 | 8.93 | -1.08 | 0.356 | -0.693 | 0.0459 | -0.772 | -0.778 | 22 | 28.93 | 208 | -- | -- |
| 90.53 | 0.443 | 8.94 | -1.17 | 0.38 | -0.7 | 0.0276 | -- | -0.789 | 21.9 | 29 | 200 | -- | -- |
| 90 | 0.442 | 8.93 | -1.08 | 0.364 | -0.684 | -- | -0.772 | -0.779 | 22.1 | 28.9 | 205 | -- | -- |
| 90.48 | 0.443 | 8.94 | -1.18 | 0.369 | -0.733 | -- | -- | -0.798 | 22 | 28.9 | 200 | -- | -- |
| 94.71 | 0.453 | 8.92 | -1.03 | -- | -0.768 | -- | -1.23 | -0.778 | -- | 28.85 | 417 | -- | -- |
| 106.64 | 0.484 | 8.94 | -1.04 | 0.542 | -- | 1 | -- | -0.747 | 18.6 | -- | -- | -- | -- |
| 109.02 | 0.489 | 8.94 | -1.06 | 0.547 | -- | -- | -- | -0.744 | 19 | -- | -- | -- | -- |
| 95.59 | 0.455 | 8.94 | -1.17 | -- | -0.844 | -- | -- | -0.813 | -- | 28.9 | 414 | -- | -- |
| 126.82 | 0.524 | 8.91 | -- | 0.365 | -0.582 | -- | -- | -0.658 | 21 | 29 | 204 | -- | -- |
| 124.71 | 0.522 | 8.93 | -1.07 | -- | -- | -- | -- | -0.755 | -- | -- | -- | -- | -- |
| 138.41 | 0.55 | 8.91 | -- | 0.559 | -- | -- | -- | -0.627 | 18.8 | -- | -- | -- | -- |
| 132.68 | 0.536 | 8.91 | -- | -- | -0.736 | -- | -- | -0.68 | -- | 28.81 | 415 | -- | -- |
| 154.76 | 0.581 | 8.9 | -- | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 4 | 89.75 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 6 | 89.92 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 9 | 90.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 20 | 90.23 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 14 |
| 29 | 90.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 36 | 90.37 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 46 | 90.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 57 | 90.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 76 | 91.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 79 | 91.05 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 97 | 91.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 103 | 91.18 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 152 | 91.38 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 157 | 91.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 182 | 91.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 207 | 91.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 250 | 91.89 | radiation | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 255 | 91.92 | radiation | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 280 | 92.08 | radiation | 30 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 405 | 92.48 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 490 | 92.63 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 534 | 92.76 | radiation | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 551 | 92.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 584 | 92.95 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 588 | 92.96 | radiation | 30 | 720 | < th | dose independent | rect. | 15 | 20 |
| 603 | 93.00 | radiation | 30 | 720 | > th | dose independent | rect. | 15 | 20 |
| 623 | 93.06 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 677 | 93.22 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 691 | 93.22 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 744 | 93.34 | radiation | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 765 | 93.36 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 778 | 93.41 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 785 | 93.45 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 787 | 93.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 821 | 93.55 | temperature | 30 | 270 | > th | dose independent | sin | 2 | NA |
| 847 | 93.62 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 860 | 93.66 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 918 | 93.78 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 923 | 93.79 | radiation | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 950 | 93.83 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 7 |
| 957 | 93.84 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 20 |
| 959 | 93.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 975 | 93.87 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |