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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0765800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sterol-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0451) R2 : 0.375
β1 : 1.44 (0.176) R2dD : 0.124 R2D : 0.0107
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.19 (0.168) R2dE : 0.339 R2E : 0.243
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.125 (0.107) R2dN8 : 0.00173 R2N8 : 0.0311
σ : 0.814
deviance : 305.42
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C
peak time of C : --
E
wheather : temperature
threshold : 24.9
memory length : 2790
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.42
open length of G : 0.225

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.35 0.814 4.46 1.18 0.227 2.4 -0.272 1.29 -0.15 0.557 25.02 2778 1.42 0.467
303.43 0.811 4.45 1.48 0.21 2.35 -0.407 -- -0.121 0.481 25.41 2779 1.41 0.483
300.63 0.808 4.46 1.18 0.228 2.38 -- 1.35 -0.15 0.626 24.9 2777 1.41 0.463
303.44 0.811 4.42 1.51 0.212 2.38 -- -- -0.0651 0.809 25 2783 1.4 0.403
302.62 0.81 4.46 1.14 -- 2.29 -- 1.54 -0.154 -- 24.82 2789 1.42 0.216
425.44 0.967 4.57 0.542 0.153 -- -0.292 -- -0.756 18.5 -- -- -- --
425.6 0.966 4.57 0.547 0.156 -- -- -- -0.756 17.8 -- -- -- --
305.42 0.814 4.43 1.44 -- 2.19 -- -- -0.125 -- 24.9 2790 1.42 0.225
353.6 0.876 4.49 -- 0.359 1.95 -- -- -0.377 23.7 25.77 2590 1.23 0.341
426.85 0.965 4.57 0.542 -- -- -- -- -0.76 -- -- -- -- --
433.49 0.974 4.58 -- 0.147 -- -- -- -0.817 18 -- -- -- --
357.08 0.88 4.48 -- -- 1.89 -- -- -0.36 -- 25.88 2790 1.33 0.332
434.62 0.973 4.58 -- -- -- -- -- -0.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.23 temperature 20 4320 > th dose independent rect. 21 2
2 310.74 temperature 25 4320 < th dose dependent rect. 1 1
3 310.95 temperature 20 4320 < th dose independent rect. 18 7
5 311.08 temperature 20 4320 < th dose independent rect. 20 4
11 312.07 temperature 25 4320 < th dose dependent rect. 21 1
16 312.29 temperature 20 4320 < th dose independent rect. 21 2
19 312.49 temperature 25 4320 < th dose dependent rect. 21 5
20 312.53 temperature 20 4320 > th dose independent rect. 18 7
43 313.50 temperature 10 4320 > th dose dependent rect. 1 1
55 313.71 temperature 25 4320 < th dose dependent rect. 17 11
108 315.06 temperature 20 1440 < th dose independent rect. 4 1
109 315.08 temperature 20 1440 > th dose dependent rect. 1 5
113 315.15 temperature 20 4320 < th dose independent sin 16 NA
115 315.17 temperature 20 1440 > th dose independent rect. 4 1
192 316.44 temperature 20 4320 > th dose independent sin 15 NA
224 316.87 temperature 10 4320 > th dose dependent rect. 21 7
236 316.97 temperature 25 4320 < th dose dependent sin 14 NA
468 319.40 temperature 25 1440 < th dose dependent rect. 18 1
800 322.70 temperature 25 1440 < th dose dependent rect. 24 23
819 322.85 temperature 25 1440 < th dose dependent no NA NA
877 323.26 temperature 25 1440 < th dose dependent rect. 21 23
911 323.45 temperature 25 1440 < th dose dependent rect. 4 23
993 324.00 temperature 10 4320 > th dose dependent sin 12 NA