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Os02g0762300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0021 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0178) R2 : 2.33e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00386 (0.0375) R2dN8 : 3e-05 R2N8 : 2.33e-05
σ : 0.336
deviance : 51.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.78 0.256 10.7 -0.643 0.307 0.56 0.0681 0.277 0.00184 16.9 23.71 20 -- --
29.87 0.255 10.7 -0.61 0.308 0.519 -0.00128 -- 0.0116 16.9 24 29 -- --
29.79 0.254 10.7 -0.637 0.306 0.561 -- 0.249 0.00331 16.9 23.75 29 -- --
29.87 0.255 10.7 -0.609 0.307 0.52 -- -- 0.0115 16.9 24 29 -- --
34.58 0.275 10.7 -0.665 -- 0.452 -- 0.18 -0.019 -- 23.6 9 -- --
33.63 0.272 10.7 -0.726 0.271 -- 0.0243 -- -0.0714 17.9 -- -- -- --
33.64 0.272 10.7 -0.726 0.272 -- -- -- -0.0713 17.9 -- -- -- --
34.63 0.274 10.7 -0.645 -- 0.431 -- -- -0.0132 -- 23.7 9 -- --
38.11 0.288 10.7 -- 0.345 0.789 -- -- 0.135 17.6 24.14 360 -- --
37.46 0.286 10.7 -0.734 -- -- -- -- -0.0776 -- -- -- -- --
47.52 0.322 10.7 -- 0.283 -- -- -- 0.00952 17.8 -- -- -- --
39.22 0.292 10.7 -- -- 0.858 -- -- 0.118 -- 21.2 8502 -- --
51.67 0.336 10.7 -- -- -- -- -- 0.00386 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.78 temperature 15.0 30 > th dose dependent rect. 23 10
8 26.37 temperature 15.0 10 > th dose dependent rect. 15 18
16 26.73 temperature 10.0 270 > th dose dependent rect. 21 10
34 27.22 temperature 10.0 270 > th dose dependent rect. 11 20
40 27.34 temperature 20.0 30 > th dose independent rect. 15 18
42 27.39 temperature 20.0 270 > th dose independent rect. 11 20
43 27.40 temperature 20.0 30 > th dose independent rect. 13 20
115 27.92 temperature 10.0 720 > th dose dependent rect. 19 6
134 28.01 temperature 15.0 720 > th dose dependent rect. 20 4
151 28.09 temperature 10.0 720 > th dose dependent rect. 12 13
161 28.13 temperature 20.0 30 > th dose independent rect. 23 10
169 28.16 temperature 10.0 720 > th dose dependent rect. 13 11
189 28.27 temperature 30.0 720 < th dose dependent rect. 14 14
234 28.42 radiation 30.0 90 < th dose independent rect. 23 10
254 28.47 temperature 25.0 720 < th dose dependent rect. 11 15
301 28.58 wind 9.0 90 < th dose dependent rect. 23 10
303 28.59 temperature 15.0 270 > th dose dependent rect. 9 1
322 28.61 atmosphere 1015.0 30 < th dose dependent rect. 15 18
323 28.62 temperature 25.0 720 < th dose dependent sin 17 NA
334 28.64 temperature 25.0 720 < th dose independent rect. 13 15
359 28.71 temperature 30.0 90 < th dose independent rect. 23 10
374 28.74 temperature 25.0 720 > th dose independent rect. 12 14
377 28.75 wind 5.0 90 < th dose independent rect. 23 10
378 28.75 atmosphere 995.0 90 > th dose independent rect. 9 14
384 28.76 temperature 10.0 720 > th dose dependent sin 15 NA
426 28.83 temperature 20.0 270 > th dose independent rect. 2 15
465 28.88 humidity 70.0 90 > th dose independent rect. 23 10
512 28.93 humidity 90.0 270 < th dose independent rect. 9 1
513 28.93 atmosphere 1000.0 270 > th dose independent rect. 17 9
520 28.94 wind 1.0 30 > th dose independent rect. 9 6
535 28.95 temperature 30.0 720 < th dose dependent rect. 16 5
541 28.96 temperature 20.0 30 > th dose independent rect. 2 7
551 28.97 temperature 30.0 10 < th dose dependent rect. 18 10
555 28.98 temperature 30.0 720 < th dose dependent rect. 18 1
577 29.01 temperature 10.0 30 > th dose dependent rect. 9 6
598 29.04 atmosphere 1015.0 90 < th dose independent rect. 23 10
634 29.08 atmosphere 1015.0 270 < th dose dependent rect. 11 7
650 29.10 atmosphere 995.0 90 > th dose independent rect. 23 10
652 29.10 temperature 10.0 90 > th dose independent rect. 9 14
662 29.11 wind 9.0 90 < th dose independent rect. 9 14
672 29.12 humidity 80.0 90 < th dose independent rect. 20 17
684 29.13 temperature 20.0 30 > th dose independent rect. 23 21
685 29.13 atmosphere 1015.0 270 < th dose dependent rect. 12 5
697 29.15 temperature 25.0 720 < th dose independent sin 16 NA
698 29.15 radiation 1.0 10 > th dose independent rect. 9 6
709 29.16 precipitation 0.1 30 < th dose independent rect. 15 18
714 29.16 precipitation 0.1 30 < th dose dependent rect. 15 18
716 29.17 precipitation 0.1 30 < th dose independent rect. 9 6
721 29.17 temperature 20.0 30 > th dose dependent rect. 9 4
724 29.17 precipitation 0.1 30 < th dose dependent rect. 9 6
730 29.18 temperature 10.0 10 > th dose independent rect. 9 6
734 29.18 temperature 10.0 1440 > th dose independent rect. 10 6
737 29.18 atmosphere 995.0 10 > th dose independent rect. 9 6
739 29.18 atmosphere 1015.0 10 < th dose independent rect. 9 6
742 29.18 precipitation 0.1 90 < th dose independent rect. 23 10
746 29.18 temperature 10.0 1440 > th dose independent rect. 16 18
749 29.18 temperature 20.0 270 > th dose independent rect. 23 18
758 29.18 precipitation 0.1 90 < th dose dependent rect. 23 10
805 29.22 temperature 10.0 270 > th dose dependent rect. 7 4
817 29.23 atmosphere 1015.0 10 < th dose independent rect. 15 18
820 29.23 radiation 40.0 10 < th dose independent rect. 12 21
821 29.23 temperature 20.0 720 > th dose dependent rect. 23 1
824 29.24 temperature 20.0 270 > th dose independent rect. 11 7
876 29.27 atmosphere 995.0 10 > th dose dependent rect. 9 19
881 29.28 wind 9.0 30 < th dose independent rect. 15 18
898 29.31 wind 9.0 270 < th dose independent rect. 9 1
899 29.31 temperature 10.0 270 > th dose independent rect. 9 1
900 29.31 atmosphere 995.0 270 > th dose independent rect. 9 1
901 29.31 atmosphere 1015.0 270 < th dose independent rect. 9 1
903 29.31 temperature 10.0 270 > th dose independent rect. 10 23
911 29.32 precipitation 0.1 270 < th dose independent rect. 9 1
920 29.32 precipitation 0.1 270 < th dose dependent rect. 9 1
930 29.33 radiation 40.0 10 < th dose independent rect. 15 18
945 29.34 temperature 25.0 720 > th dose independent sin 16 NA
946 29.34 wind 9.0 10 < th dose independent rect. 9 6
965 29.35 radiation 40.0 90 < th dose independent rect. 23 21
975 29.36 humidity 50.0 270 > th dose independent rect. 9 1
976 29.36 humidity 90.0 270 < th dose independent rect. 7 4
986 29.36 atmosphere 995.0 90 > th dose dependent rect. 9 14