Os02g0761500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0761500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.99 | 0.249 | 8.98 | 0.748 | 0.708 | 0.302 | -0.113 | -0.811 | 0.295 | 4.69 | 19.97 | 87 | -- | -- |
| 30.75 | 0.26 | 8.99 | 0.779 | 0.754 | 0.202 | -0.578 | -- | 0.275 | 4.29 | 19.98 | 86 | -- | -- |
| 28.02 | 0.247 | 8.98 | 0.746 | 0.707 | 0.304 | -- | -0.832 | 0.297 | 4.71 | 19.98 | 86 | -- | -- |
| 31.05 | 0.26 | 8.98 | 0.766 | 0.717 | 0.292 | -- | -- | 0.295 | 4.63 | 20 | 82 | -- | -- |
| 32.75 | 0.267 | 8.99 | 0.741 | -- | 0.783 | -- | -0.786 | 0.326 | -- | 6.82 | 421 | -- | -- |
| 32.6 | 0.268 | 8.99 | 0.766 | 0.842 | -- | -0.659 | -- | 0.276 | 3.71 | -- | -- | -- | -- |
| 33.87 | 0.273 | 8.99 | 0.776 | 0.841 | -- | -- | -- | 0.28 | 3.82 | -- | -- | -- | -- |
| 34.76 | 0.275 | 8.98 | 0.8 | -- | 0.809 | -- | -- | 0.328 | -- | 3.03 | 474 | -- | -- |
| 46.09 | 0.316 | 9 | -- | 0.789 | 0.32 | -- | -- | 0.187 | 4.28 | 40 | 78 | -- | -- |
| 72.86 | 0.399 | 8.99 | 0.811 | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
| 49.76 | 0.33 | 9.01 | -- | 0.857 | -- | -- | -- | 0.193 | 3.81 | -- | -- | -- | -- |
| 49.71 | 0.328 | 9 | -- | -- | 0.843 | -- | -- | 0.255 | -- | 8.75 | 431 | -- | -- |
| 90.22 | 0.443 | 9.01 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 5 | 26.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 21 | 26.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 27 | 26.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 36 | 26.58 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 58 | 26.70 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 66 | 26.77 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 72 | 26.79 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 76 | 26.80 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 85 | 26.82 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 86 | 26.82 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 94 | 26.83 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 97 | 26.84 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 101 | 26.85 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 102 | 26.85 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 106 | 26.86 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 121 | 26.89 | wind | 9 | 43200 | > th | dose independent | sin | 20 | NA |
| 129 | 26.90 | wind | 9 | 43200 | < th | dose independent | sin | 20 | NA |
| 133 | 26.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 162 | 26.93 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 165 | 26.93 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 207 | 26.96 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 240 | 26.99 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 252 | 27.00 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 336 | 27.02 | radiation | 40 | 43200 | > th | dose independent | sin | 7 | NA |
| 338 | 27.02 | radiation | 40 | 43200 | > th | dose independent | sin | 5 | NA |
| 352 | 27.03 | radiation | 40 | 43200 | > th | dose independent | sin | 3 | NA |
| 387 | 27.04 | radiation | 40 | 43200 | > th | dose dependent | sin | 7 | NA |
| 423 | 27.05 | radiation | 40 | 43200 | > th | dose dependent | sin | 5 | NA |
| 425 | 27.05 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 453 | 27.06 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 500 | 27.06 | radiation | 40 | 43200 | > th | dose dependent | sin | 3 | NA |
| 540 | 27.07 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 541 | 27.07 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 543 | 27.07 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 699 | 27.07 | radiation | 10 | 43200 | > th | dose dependent | sin | 8 | NA |
| 772 | 27.08 | radiation | 40 | 43200 | > th | dose dependent | sin | 0 | NA |
| 774 | 27.08 | radiation | 1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 815 | 27.09 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 911 | 27.10 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 927 | 27.10 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |