Os02g0760400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0760400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.54 | 0.272 | 11.4 | 0.977 | 0.4 | 0.422 | 0.218 | 1.34 | 0.378 | 10.1 | 38.78 | 12086 | -- | -- |
| 36.26 | 0.28 | 11.4 | 1.17 | 0.412 | 0.381 | 0.208 | -- | 0.394 | 9.94 | 31.67 | 12766 | -- | -- |
| 33.73 | 0.27 | 11.4 | 0.983 | 0.401 | 0.423 | -- | 1.35 | 0.38 | 10 | 38.79 | 12084 | -- | -- |
| 36.4 | 0.281 | 11.4 | 1.18 | 0.406 | 0.385 | -- | -- | 0.395 | 9.84 | 31.71 | 12818 | -- | -- |
| 42.91 | 0.305 | 11.4 | 0.941 | -- | 0.455 | -- | 1.42 | 0.391 | -- | 39 | 12458 | -- | -- |
| 42.64 | 0.306 | 11.4 | 1.2 | 0.42 | -- | 0.236 | -- | 0.293 | 10.1 | -- | -- | -- | -- |
| 42.86 | 0.307 | 11.4 | 1.21 | 0.419 | -- | -- | -- | 0.294 | 10 | -- | -- | -- | -- |
| 45.35 | 0.314 | 11.4 | 1.21 | -- | 0.425 | -- | -- | 0.476 | -- | 30.45 | 9646 | -- | -- |
| 62.25 | 0.367 | 11.5 | -- | 0.286 | 0.758 | -- | -- | 0.246 | 9.01 | 9.717 | 11249 | -- | -- |
| 53.44 | 0.342 | 11.5 | 1.2 | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
| 81.44 | 0.422 | 11.5 | -- | 0.415 | -- | -- | -- | 0.159 | 9.8 | -- | -- | -- | -- |
| 67.9 | 0.384 | 11.5 | -- | -- | 0.939 | -- | -- | 0.243 | -- | 9.417 | 11042 | -- | -- |
| 91.72 | 0.447 | 11.5 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 2 | 32.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 3 | 32.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 12 | 32.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 32 | 32.86 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 63 | 32.97 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 78 | 33.00 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 102 | 33.03 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 140 | 33.12 | radiation | 10.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 144 | 33.12 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 150 | 33.12 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 18 |
| 167 | 33.14 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 204 | 33.19 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 223 | 33.23 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 226 | 33.23 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 237 | 33.24 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 256 | 33.25 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 268 | 33.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 271 | 33.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 275 | 33.28 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 292 | 33.28 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 329 | 33.30 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 451 | 33.37 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 461 | 33.38 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 496 | 33.39 | temperature | 30.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 497 | 33.39 | temperature | 30.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 498 | 33.39 | radiation | 30.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 544 | 33.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 554 | 33.41 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 557 | 33.42 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 561 | 33.42 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 569 | 33.42 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 634 | 33.44 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 672 | 33.46 | radiation | 10.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 675 | 33.46 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 679 | 33.46 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 684 | 33.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 708 | 33.47 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 717 | 33.48 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 744 | 33.49 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 754 | 33.50 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 756 | 33.50 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 774 | 33.51 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 842 | 33.53 | radiation | 40.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 980 | 33.56 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 4 |