FiT-DB / Search/ Help/ Sample detail

Os02g0760200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.82 (0.0504) R2 : 0.613
β1 : -2.54 (0.197) R2dD : 0.222 R2D : 0.258
β2 : 0.661 (0.114) R2dC : 0.0288 R2C : -0.0486
β3 : -5.34 (0.393) R2dE : 0.785 R2E : -0.193
β4 : -3.29 (0.517) R2dD*C : 0.0345 R2D*C : -0.0501
β5 : -14.2 (0.959) R2dD*E : 0.823 R2D*E : -0.882
γ1 : -0.0309 (0.104) R2dN8 : 0.000124 R2N8 : -0.0795
σ : 0.825
deviance : 308.42
__
_____
C
peak time of C : 17.1
E
wheather : radiation
threshold : 29.94
memory length : 4324
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
308.42 0.825 7.82 -2.54 0.661 -5.34 -3.29 -14.2 -0.0309 17.1 29.94 4324 6.02 2
454.7 1 7.49 -3.28 0.511 -0.483 -3.26 -- -0.193 17.1 29.94 4324 6.02 2
335.83 0.854 7.82 -2.52 0.636 -5.36 -- -14.1 -0.0406 17.1 29.91 4324 6.02 1.99
385.5 0.914 7.46 -3.48 0.647 -1.24 -- -- -0.339 17 22.02 2886 7.92 2.32
355.85 0.879 7.8 -2.56 -- -5.38 -- -14.1 -0.0399 -- 29.77 4326 6.01 1.99
460.24 1.01 7.5 -3.29 0.632 -- -3.35 -- -0.245 17.3 -- -- -- --
486.36 1.03 7.52 -3.29 0.643 -- -- -- -0.262 18.3 -- -- -- --
393.17 0.924 7.48 -3.35 -- -1.43 -- -- 0.0381 -- 26.58 2911 6.78 3.06
678.66 1.21 7.48 -- 0.768 -1.33 -- -- -0.00332 16.8 27.67 5795 7.46 2.54
507.81 1.05 7.5 -3.3 -- -- -- -- -0.276 -- -- -- -- --
771.04 1.3 7.43 -- 0.689 -- -- -- 0.104 18.1 -- -- -- --
680.99 1.22 7.47 -- -- -2.62 -- -- 0.0601 -- 27.23 5891 7.44 2.54
795.69 1.32 7.42 -- -- -- -- -- 0.0909 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.57 radiation 30 4320 < th dose independent rect. 6 2
5 314.52 radiation 30 4320 < th dose independent rect. 21 11
8 314.69 radiation 30 4320 < th dose independent rect. 23 9
9 314.74 radiation 30 4320 < th dose independent rect. 19 13
13 315.13 radiation 30 4320 < th dose independent rect. 17 15
16 317.76 temperature 15 1440 > th dose dependent rect. 11 3
18 317.89 temperature 20 1440 > th dose dependent rect. 11 6
20 318.65 temperature 10 1440 > th dose dependent rect. 10 7
39 319.53 temperature 20 1440 > th dose dependent rect. 15 2
54 320.12 temperature 20 1440 > th dose dependent rect. 13 1
102 323.00 temperature 10 1440 > th dose dependent rect. 15 2
134 324.53 humidity 50 4320 > th dose independent rect. 13 4
149 325.03 humidity 50 14400 < th dose dependent rect. 16 19
164 325.43 radiation 30 14400 > th dose independent rect. 16 16
170 325.64 wind 5 43200 > th dose dependent rect. 19 3
176 325.91 radiation 30 14400 < th dose independent rect. 16 2
181 325.99 radiation 10 1440 > th dose independent rect. 15 16
184 326.07 wind 9 14400 > th dose independent rect. 16 1
203 326.76 radiation 30 14400 < th dose independent rect. 16 4
210 327.16 humidity 50 4320 > th dose independent rect. 15 1
211 327.20 radiation 30 14400 < th dose independent rect. 16 9
218 327.28 radiation 30 14400 < th dose independent rect. 16 6
232 327.66 temperature 10 1440 > th dose dependent sin 23 NA
266 328.54 wind 5 43200 > th dose independent rect. 19 20
272 328.68 wind 5 43200 < th dose independent rect. 20 1
274 328.72 radiation 20 4320 > th dose dependent rect. 16 16
281 328.98 wind 5 43200 < th dose independent rect. 19 20
282 329.00 wind 5 43200 > th dose independent rect. 20 1
293 329.34 humidity 50 14400 < th dose dependent rect. 16 1
301 329.45 radiation 30 4320 > th dose independent rect. 7 1
325 329.59 radiation 10 14400 > th dose dependent rect. 17 13
332 329.66 wind 5 43200 > th dose independent rect. 19 3
365 330.30 temperature 30 1440 < th dose independent rect. 15 21
370 330.36 wind 5 43200 > th dose dependent rect. 20 1
376 330.39 temperature 25 1440 > th dose dependent rect. 21 20
413 330.64 temperature 30 1440 < th dose independent rect. 18 19
433 330.84 radiation 10 1440 > th dose independent rect. 15 3
445 330.85 temperature 30 1440 < th dose independent rect. 9 4
463 331.09 temperature 30 1440 > th dose independent rect. 15 21
501 331.42 radiation 40 14400 > th dose dependent rect. 15 18
525 331.48 wind 5 43200 < th dose independent rect. 19 3
528 331.51 temperature 25 1440 > th dose dependent rect. 6 17
530 331.54 temperature 30 1440 > th dose independent rect. 9 4
531 331.55 temperature 30 1440 > th dose independent rect. 18 19
532 331.56 humidity 60 14400 < th dose independent rect. 17 14
534 331.57 humidity 60 14400 < th dose independent rect. 17 4
550 331.61 radiation 10 14400 > th dose dependent rect. 17 1
580 331.74 humidity 50 14400 < th dose independent rect. 16 19
609 331.88 wind 5 43200 < th dose independent rect. 24 15
614 331.92 wind 5 43200 > th dose independent rect. 2 13
618 331.95 temperature 30 1440 < th dose independent rect. 6 7
636 332.00 temperature 25 1440 > th dose dependent rect. 12 22
638 332.01 temperature 30 1440 < th dose independent rect. 21 16
653 332.08 temperature 30 1440 < th dose independent rect. 2 11
684 332.21 humidity 50 14400 > th dose independent rect. 16 18
688 332.23 humidity 50 14400 < th dose independent rect. 17 17
699 332.30 humidity 50 4320 < th dose independent rect. 10 7
725 332.37 wind 9 14400 < th dose independent rect. 16 1
728 332.40 wind 5 43200 > th dose independent sin 4 NA
729 332.41 temperature 30 1440 < th dose independent rect. 10 1
755 332.55 wind 5 43200 > th dose independent rect. 19 6
763 332.62 temperature 25 1440 > th dose dependent no NA NA
779 332.75 wind 5 43200 < th dose independent sin 4 NA
788 332.84 wind 7 43200 > th dose independent rect. 17 5
791 332.86 radiation 30 4320 > th dose dependent rect. 7 1
806 332.87 temperature 30 1440 < th dose independent sin 9 NA
810 332.91 radiation 10 14400 > th dose independent rect. 5 1
836 332.98 temperature 30 1440 < th dose independent sin 7 NA
841 333.03 humidity 50 4320 > th dose independent rect. 13 22
847 333.05 humidity 70 14400 < th dose dependent rect. 18 13
856 333.14 temperature 25 1440 > th dose dependent rect. 15 23
863 333.18 wind 7 43200 < th dose independent rect. 17 5
895 333.29 humidity 70 14400 < th dose dependent rect. 18 4
925 333.45 wind 9 14400 > th dose dependent rect. 16 1
952 333.57 humidity 50 4320 > th dose independent rect. 13 14
960 333.61 radiation 1 4320 > th dose dependent rect. 4 2
974 333.63 temperature 25 1440 > th dose dependent rect. 6 2
980 333.65 radiation 40 14400 < th dose independent rect. 15 18
982 333.65 temperature 15 270 > th dose dependent rect. 8 23
983 333.66 humidity 50 4320 > th dose independent rect. 13 12