Os02g0759700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os02g0759700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.55 | 0.244 | 11.3 | 0.815 | 0.46 | -0.392 | -0.408 | 0.605 | -0.0449 | 8.02 | 20 | 10 | -- | -- |
| 28.38 | 0.25 | 11.3 | 0.818 | 0.505 | -0.304 | -0.926 | -- | -0.0403 | 8.82 | 20 | 10 | -- | -- |
| 27.87 | 0.246 | 11.3 | 0.811 | 0.455 | -0.394 | -- | 0.779 | -0.0422 | 8.03 | 19.02 | 9 | -- | -- |
| 31.04 | 0.259 | 11.3 | 0.787 | 0.461 | -0.377 | -- | -- | -0.0409 | 8.11 | 17.6 | 5 | -- | -- |
| 35.38 | 0.277 | 11.3 | 0.838 | -- | -0.556 | -- | 0.929 | -0.0352 | -- | 10.61 | 6 | -- | -- |
| 30.62 | 0.259 | 11.3 | 0.828 | 0.748 | -- | -0.868 | -- | -0.0381 | 9.83 | -- | -- | -- | -- |
| 33.51 | 0.271 | 11.3 | 0.794 | 0.752 | -- | -- | -- | -0.0398 | 9.84 | -- | -- | -- | -- |
| 38.26 | 0.288 | 11.3 | 0.81 | -- | -0.55 | -- | -- | -0.0433 | -- | 10 | 2 | -- | -- |
| 47.18 | 0.322 | 11.3 | -- | 0.464 | -0.383 | -- | -- | -0.13 | 8.01 | 18.52 | 6 | -- | -- |
| 67.34 | 0.383 | 11.3 | 0.787 | -- | -- | -- | -- | -0.0394 | -- | -- | -- | -- | -- |
| 50.15 | 0.331 | 11.3 | -- | 0.75 | -- | -- | -- | -0.128 | 9.76 | -- | -- | -- | -- |
| 55.37 | 0.347 | 11.3 | -- | -- | -0.553 | -- | -- | -0.129 | -- | 12.37 | 2 | -- | -- |
| 83.66 | 0.427 | 11.3 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 32 | 24.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 33 | 24.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 50 | 24.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 62 | 24.64 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 77 | 24.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 128 | 24.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 148 | 25.09 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 177 | 25.20 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 184 | 25.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 252 | 25.42 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 265 | 25.46 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 272 | 25.48 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 286 | 25.53 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 533 | 26.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 546 | 26.07 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 554 | 26.08 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 578 | 26.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 636 | 26.23 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 651 | 26.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 679 | 26.29 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 5 |
| 695 | 26.31 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 697 | 26.32 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 5 |
| 820 | 26.50 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 7 |
| 828 | 26.51 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 881 | 26.59 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 16 |
| 897 | 26.61 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 903 | 26.61 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |