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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0758200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0442) R2 : 0.135
β1 : 1.29 (0.162) R2dD : 0.124 R2D : 0.131
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.0943) R2dN8 : 0.00428 R2N8 : 0.011
σ : 0.829
deviance : 314.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.81 0.8 4.23 2.16 0.327 -0.463 -0.824 -4.49 0.0685 7.99 0.17 4357 -- --
296.12 0.801 4.4 1.49 0.384 -0.634 -0.877 -- -0.347 7.66 20 22284 -- --
291.68 0.795 4.23 2.12 0.33 -0.418 -- -4.32 0.0721 8.49 0.1718 4356 -- --
297 0.803 4.42 1.36 0.366 -0.594 -- -- -0.361 8.02 20 22139 -- --
297.67 0.804 4.23 2.15 -- -0.528 -- -4.65 0.0723 -- 0.171 4359 -- --
307.02 0.821 4.36 1.3 0.341 -- -0.697 -- -0.127 7.94 -- -- -- --
308.31 0.822 4.36 1.28 0.341 -- -- -- -0.126 8.49 -- -- -- --
303.62 0.812 4.42 1.34 -- -0.57 -- -- -0.348 -- 20 23148 -- --
342.1 0.861 4.44 -- 0.41 -0.55 -- -- -0.472 7.72 15.74 20757 -- --
314.8 0.829 4.36 1.29 -- -- -- -- -0.122 -- -- -- -- --
351.74 0.877 4.39 -- 0.347 -- -- -- -0.269 8.22 -- -- -- --
348.95 0.87 4.44 -- -- -0.537 -- -- -0.471 -- 15.62 20385 -- --
358.38 0.884 4.4 -- -- -- -- -- -0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.92 temperature 25 90 < th dose dependent rect. 3 17
3 282.03 temperature 25 90 < th dose independent rect. 3 18
4 282.13 temperature 25 10 < th dose dependent rect. 4 17
14 282.56 temperature 25 90 < th dose independent rect. 1 20
34 284.06 wind 9 1440 < th dose independent rect. 3 7
42 284.96 humidity 50 14400 > th dose independent rect. 3 6
46 285.27 radiation 40 43200 < th dose independent rect. 16 5
48 285.29 radiation 1 270 < th dose dependent rect. 3 15
50 285.31 temperature 25 90 < th dose independent rect. 24 23
65 285.65 radiation 1 270 < th dose dependent sin 2 NA
73 286.18 humidity 60 14400 < th dose dependent rect. 8 2
76 286.21 temperature 30 270 < th dose dependent rect. 1 5
90 286.34 humidity 60 14400 > th dose independent rect. 8 1
93 286.41 atmosphere 995 10 > th dose independent rect. 8 18
97 286.52 radiation 40 43200 < th dose independent rect. 16 8
102 286.64 temperature 25 30 < th dose dependent sin 0 NA
110 286.75 radiation 10 14400 > th dose dependent rect. 6 1
111 286.76 temperature 30 270 < th dose dependent rect. 3 2
137 286.91 radiation 40 43200 < th dose independent rect. 16 3
141 286.92 humidity 60 14400 < th dose independent rect. 8 2
143 286.93 temperature 25 90 > th dose independent rect. 7 22
144 286.93 wind 9 4320 > th dose dependent rect. 7 3
148 286.98 humidity 50 14400 > th dose independent rect. 20 14
153 287.00 humidity 50 14400 > th dose independent rect. 23 11
193 287.23 radiation 1 10 < th dose dependent rect. 5 21
270 287.59 radiation 20 14400 < th dose dependent rect. 6 1
309 287.67 atmosphere 1010 30 < th dose independent rect. 8 17
313 287.69 temperature 25 10 > th dose independent rect. 8 9
318 287.74 radiation 1 270 < th dose independent rect. 2 16
326 287.85 radiation 1 270 < th dose independent sin 3 NA
330 287.87 radiation 1 10 < th dose independent rect. 5 21
342 287.94 humidity 50 14400 < th dose independent rect. 16 20
346 287.96 radiation 40 14400 < th dose dependent rect. 21 10
348 287.97 radiation 40 14400 < th dose dependent rect. 24 7
351 287.98 atmosphere 1010 30 < th dose independent rect. 8 9
356 287.98 radiation 40 14400 < th dose dependent rect. 19 12
366 288.03 radiation 1 30 < th dose independent rect. 11 15
379 288.05 radiation 30 14400 < th dose dependent rect. 3 4
383 288.07 humidity 50 14400 > th dose independent sin 9 NA
398 288.14 radiation 1 30 < th dose independent rect. 13 13
425 288.24 humidity 80 14400 < th dose dependent rect. 8 1
428 288.25 humidity 50 14400 < th dose independent sin 9 NA
432 288.27 temperature 25 90 > th dose independent rect. 18 23
436 288.30 humidity 50 14400 > th dose independent rect. 16 20
453 288.34 wind 1 90 > th dose dependent rect. 12 9
498 288.45 atmosphere 995 30 > th dose independent rect. 3 23
501 288.48 atmosphere 995 10 > th dose independent rect. 8 9
502 288.49 radiation 20 14400 < th dose independent rect. 22 10
504 288.50 radiation 20 14400 < th dose independent rect. 24 8
506 288.50 radiation 20 14400 < th dose independent rect. 19 13
507 288.50 humidity 80 10 > th dose independent rect. 3 17
514 288.54 radiation 20 14400 < th dose independent rect. 5 3
516 288.55 radiation 20 14400 < th dose independent rect. 3 5
528 288.59 radiation 1 30 < th dose independent rect. 15 11
564 288.75 wind 1 43200 < th dose independent rect. 4 5
571 288.79 humidity 80 43200 < th dose independent rect. 7 3
575 288.79 humidity 60 14400 < th dose dependent rect. 18 20
577 288.80 radiation 1 10 < th dose dependent rect. 11 15
581 288.81 radiation 10 14400 > th dose independent rect. 5 3
624 288.86 humidity 50 43200 > th dose dependent rect. 8 1
630 288.88 wind 9 4320 < th dose independent rect. 1 8
633 288.89 radiation 30 10 < th dose independent rect. 17 15
635 288.89 temperature 25 90 < th dose independent rect. 9 23
636 288.89 wind 9 4320 > th dose dependent rect. 9 1
668 288.93 humidity 50 14400 < th dose dependent rect. 16 20
671 288.95 humidity 80 10 > th dose independent rect. 5 15
672 288.95 humidity 60 14400 < th dose dependent sin 9 NA
689 288.97 radiation 10 720 < th dose independent rect. 7 1
702 288.98 radiation 1 10 < th dose dependent rect. 13 13
720 289.02 humidity 60 14400 < th dose dependent rect. 8 6
724 289.04 temperature 15 270 > th dose independent rect. 7 17
762 289.11 wind 1 43200 < th dose independent rect. 7 2
769 289.13 humidity 90 10 < th dose independent rect. 8 9
791 289.16 wind 5 90 < th dose independent rect. 8 18
811 289.21 temperature 25 90 < th dose dependent rect. 3 11
820 289.25 wind 1 43200 > th dose independent rect. 4 4
844 289.27 atmosphere 1010 30 < th dose independent rect. 8 19
851 289.31 humidity 60 14400 < th dose dependent rect. 12 2
873 289.36 temperature 30 10 < th dose independent rect. 8 18
894 289.39 temperature 15 270 > th dose independent rect. 20 15
913 289.44 temperature 25 10 < th dose dependent rect. 11 9
942 289.51 humidity 50 14400 < th dose dependent rect. 16 1
970 289.52 radiation 1 10 < th dose dependent rect. 15 11
978 289.54 humidity 90 90 < th dose independent rect. 7 8
984 289.57 humidity 90 10 < th dose independent rect. 8 7