Os02g0757900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Poly(A)-binding protein II-like.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0757900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Poly(A)-binding protein II-like.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.11 | 0.231 | 11.1 | -0.363 | 0.158 | 1.27 | -0.729 | -1.92 | -0.223 | 2.56 | 24.22 | 33 | -- | -- |
| 25.54 | 0.235 | 11.1 | -0.116 | 0.139 | 1.12 | -0.379 | -- | -0.155 | 2.68 | 24.13 | 28 | -- | -- |
| 25.13 | 0.233 | 11.1 | -0.316 | 0.19 | 1.28 | -- | -1.4 | -0.219 | 3.66 | 24.13 | 53 | -- | -- |
| 25.78 | 0.236 | 11.1 | -0.105 | 0.167 | 1.14 | -- | -- | -0.152 | 3.59 | 24.1 | 49 | -- | -- |
| 26.31 | 0.239 | 11.1 | -0.201 | -- | 1.1 | -- | -1.11 | -0.135 | -- | 24.87 | 49 | -- | -- |
| 44.37 | 0.312 | 11.1 | 0.065 | 0.304 | -- | 0.735 | -- | -0.0225 | 14.4 | -- | -- | -- | -- |
| 46.34 | 0.319 | 11.1 | 0.0852 | 0.307 | -- | -- | -- | -0.018 | 14.5 | -- | -- | -- | -- |
| 26.78 | 0.241 | 11.1 | -0.0814 | -- | 0.994 | -- | -- | -0.131 | -- | 24.13 | 49 | -- | -- |
| 25.94 | 0.237 | 11.1 | -- | 0.171 | 1.11 | -- | -- | -0.132 | 4.82 | 24.2 | 52 | -- | -- |
| 51.86 | 0.337 | 11.1 | 0.0721 | -- | -- | -- | -- | -0.0257 | -- | -- | -- | -- | -- |
| 46.53 | 0.319 | 11.1 | -- | 0.305 | -- | -- | -- | -0.0275 | 14.5 | -- | -- | -- | -- |
| 26.94 | 0.242 | 11.1 | -- | -- | 0.984 | -- | -- | -0.117 | -- | 24.23 | 48 | -- | -- |
| 52 | 0.337 | 11.1 | -- | -- | -- | -- | -- | -0.0337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 2 | 24.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 20 |
| 33 | 24.25 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 34 | 24.26 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 162 | 24.67 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 203 | 24.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 219 | 25.49 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 225 | 25.54 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 244 | 25.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 275 | 26.00 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 393 | 27.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 407 | 27.55 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 463 | 28.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 537 | 28.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 539 | 28.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 542 | 28.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 545 | 28.33 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 551 | 28.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 565 | 28.41 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 658 | 28.71 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 686 | 28.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 738 | 28.93 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 845 | 29.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 849 | 29.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |