Os02g0757100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phi-1 protein.
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Os02g0757100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phi-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.52 | 0.565 | 2.98 | -0.113 | 0.196 | -1.03 | 0.045 | 1.88 | 0.0296 | 11.3 | 8.7 | 3 | -- | -- |
| 144.83 | 0.561 | 2.99 | -0.097 | 0.198 | -1.56 | 0.00589 | -- | 0.0276 | 11.4 | 8.699 | 3 | -- | -- |
| 144.53 | 0.56 | 2.98 | -0.111 | 0.196 | -1.04 | -- | 1.87 | 0.0298 | 11.3 | 8.7 | 3 | -- | -- |
| 144.83 | 0.561 | 2.99 | -0.0967 | 0.198 | -1.56 | -- | -- | 0.0277 | 11.4 | 8.689 | 3 | -- | -- |
| 146.93 | 0.565 | 2.98 | -0.115 | -- | -1.02 | -- | 1.99 | 0.0286 | -- | 8.695 | 3 | -- | -- |
| 155.82 | 0.585 | 3 | -0.217 | 0.216 | -- | -0.237 | -- | -0.014 | 13 | -- | -- | -- | -- |
| 155.99 | 0.585 | 3 | -0.226 | 0.218 | -- | -- | -- | -0.016 | 12.4 | -- | -- | -- | -- |
| 147.29 | 0.565 | 2.99 | -0.0999 | -- | -1.58 | -- | -- | 0.0263 | -- | 8.617 | 3 | -- | -- |
| 145.07 | 0.561 | 2.98 | -- | 0.199 | -1.6 | -- | -- | 0.0392 | 11.4 | 8.673 | 3 | -- | -- |
| 158.96 | 0.589 | 3 | -0.234 | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
| 157.34 | 0.587 | 2.99 | -- | 0.221 | -- | -- | -- | 0.00923 | 12.5 | -- | -- | -- | -- |
| 147.54 | 0.566 | 2.99 | -- | -- | -1.63 | -- | -- | 0.0382 | -- | 8.579 | 3 | -- | -- |
| 160.4 | 0.591 | 3 | -- | -- | -- | -- | -- | 0.00642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.14 | wind | 7.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 137.22 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 14 | 137.22 | wind | 9.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 79 | 143.25 | humidity | 80.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 106 | 144.76 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 112 | 145.09 | temperature | 25.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 127 | 145.71 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 147 | 146.25 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 23 |
| 192 | 146.74 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 205 | 146.92 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 207 | 146.98 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 208 | 147.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 23 |
| 215 | 147.19 | humidity | 50.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 216 | 147.21 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 217 | 147.21 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 225 | 147.30 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 234 | 147.43 | wind | 1.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 238 | 147.48 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 239 | 147.48 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 14 | 23 |
| 240 | 147.48 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 242 | 147.49 | temperature | 10.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 244 | 147.49 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 245 | 147.49 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 247 | 147.49 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 23 |
| 250 | 147.54 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 23 |
| 251 | 147.54 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 264 | 147.68 | wind | 9.0 | 90 | > th | dose independent | rect. | 12 | 11 |
| 284 | 147.75 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 306 | 147.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 315 | 147.87 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 318 | 147.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 322 | 147.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 353 | 147.98 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 1 |
| 356 | 147.98 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 359 | 147.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 3 |
| 362 | 147.99 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 393 | 148.10 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 395 | 148.12 | wind | 1.0 | 720 | > th | dose independent | rect. | 2 | 21 |
| 400 | 148.14 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 413 | 148.19 | humidity | 90.0 | 720 | > th | dose independent | rect. | 10 | 3 |
| 416 | 148.19 | wind | 9.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 422 | 148.21 | wind | 9.0 | 90 | > th | dose dependent | rect. | 12 | 22 |
| 427 | 148.22 | wind | 9.0 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 438 | 148.23 | wind | 9.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 465 | 148.29 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 3 |
| 482 | 148.32 | humidity | 90.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 495 | 148.39 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 10 | 2 |
| 500 | 148.42 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 23 |
| 509 | 148.45 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 7 | 6 |
| 554 | 148.59 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 21 |
| 568 | 148.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 11 |
| 569 | 148.63 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 573 | 148.63 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 578 | 148.64 | radiation | 30.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 593 | 148.66 | wind | 9.0 | 90 | > th | dose dependent | sin | 12 | NA |
| 623 | 148.71 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 6 |
| 624 | 148.72 | wind | 9.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 628 | 148.73 | wind | 9.0 | 90 | > th | dose independent | sin | 12 | NA |
| 630 | 148.73 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 4 |
| 648 | 148.74 | wind | 9.0 | 90 | > th | dose independent | sin | 14 | NA |
| 727 | 148.79 | radiation | 30.0 | 30 | > th | dose independent | rect. | 10 | 2 |
| 739 | 148.81 | wind | 3.0 | 90 | < th | dose dependent | rect. | 9 | 3 |
| 756 | 148.87 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 766 | 148.90 | radiation | 30.0 | 30 | > th | dose independent | rect. | 14 | 23 |
| 768 | 148.90 | wind | 1.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 835 | 148.99 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 842 | 148.99 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 13 |
| 846 | 148.99 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 853 | 149.00 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 23 | 13 |
| 855 | 149.01 | temperature | 25.0 | 90 | < th | dose independent | rect. | 9 | 3 |
| 856 | 149.01 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 18 |
| 868 | 149.04 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 6 |
| 869 | 149.04 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 10 |
| 892 | 149.06 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 913 | 149.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 13 |
| 918 | 149.11 | wind | 1.0 | 30 | > th | dose independent | rect. | 13 | 13 |
| 932 | 149.12 | wind | 9.0 | 90 | < th | dose independent | sin | 12 | NA |
| 940 | 149.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 992 | 149.17 | temperature | 25.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 998 | 149.18 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 999 | 149.18 | humidity | 50.0 | 90 | > th | dose independent | rect. | 12 | 11 |