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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0756800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphate-induced protein 1 conserved region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0595) R2 : 0.786
β1 : -4.74 (0.34) R2dD : 0.264 R2D : 0.433
β2 : 2.36 (0.132) R2dC : 0.156 R2C : 0.159
β3 : -2.04 (0.285) R2dE : 0.0895 R2E : 0.323
β4 : -2.95 (0.505) R2dD*C : 0.0164 R2D*C : 0.0293
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.02 (0.153) R2dN8 : 0.0487 R2N8 : 0.0345
σ : 1.03
deviance : 491.38
__
_____
C
peak time of C : 11
E
wheather : temperature
threshold : 19.6
memory length : 22011
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
487.6 1.04 5.07 -4.07 2.21 -1.88 -2.49 7.67 -0.868 11 25.5 3927 -- --
491.38 1.03 5.25 -4.74 2.36 -2.04 -2.95 -- -1.02 11 19.6 22011 -- --
512.72 1.05 5.07 -4 2.23 -1.86 -- 8.33 -0.853 11.1 25.59 3895 -- --
520.21 1.06 5.2 -4.06 2.39 -2.74 -- -- -0.802 11.2 19.2 24045 -- --
805.31 1.32 5.09 -3.81 -- -2.38 -- 8.51 -0.781 -- 25.7 3815 -- --
579.61 1.13 5.4 -6.66 2.42 -- -2.85 -- -1.73 11.1 -- -- -- --
613.69 1.16 5.41 -6.77 2.44 -- -- -- -1.74 11.2 -- -- -- --
873.63 1.38 5.25 -4.04 -- -2.86 -- -- -0.795 -- 19.3 23922 -- --
597.61 1.14 4.94 -- 2.36 -5.51 -- -- 0.355 11.2 18.53 47520 -- --
984.9 1.47 5.47 -6.83 -- -- -- -- -1.76 -- -- -- -- --
1821.1 2 5.24 -- 2.51 -- -- -- -0.981 11.4 -- -- -- --
946.06 1.43 4.99 -- -- -5.61 -- -- 0.364 -- 18.56 47520 -- --
2214.79 2.2 5.3 -- -- -- -- -- -1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.98 temperature 15 43200 < th dose independent rect. 24 1
2 461.20 atmosphere 1015 43200 > th dose dependent rect. 20 1
3 461.38 radiation 40 14400 < th dose independent rect. 2 6
5 461.59 temperature 15 43200 > th dose independent rect. 24 1
10 462.69 atmosphere 1015 43200 > th dose dependent rect. 17 5
13 462.84 radiation 30 43200 > th dose independent rect. 7 1
32 463.17 atmosphere 1015 43200 > th dose dependent rect. 14 9
33 463.23 temperature 15 43200 < th dose dependent rect. 1 2
43 463.81 radiation 40 43200 > th dose dependent rect. 13 2
50 464.13 radiation 40 43200 > th dose dependent rect. 13 19
111 465.09 radiation 40 14400 < th dose independent rect. 19 13
113 465.12 radiation 40 14400 < th dose independent rect. 17 15
144 466.04 radiation 30 43200 > th dose dependent rect. 16 16
146 466.06 radiation 30 43200 > th dose dependent rect. 7 1
162 466.09 atmosphere 1015 43200 > th dose independent rect. 15 6
170 466.27 atmosphere 1015 43200 < th dose independent rect. 17 3
176 466.49 radiation 40 14400 < th dose independent rect. 6 2
192 466.85 radiation 1 14400 < th dose dependent rect. 6 1
218 467.51 humidity 90 14400 > th dose dependent rect. 23 7
232 467.69 radiation 40 43200 > th dose dependent sin 14 NA
254 467.97 temperature 15 43200 < th dose dependent sin 10 NA
272 468.25 radiation 40 43200 < th dose independent rect. 13 19
277 468.28 atmosphere 1015 43200 > th dose dependent rect. 13 3
316 468.56 humidity 90 14400 > th dose dependent rect. 2 5
399 469.03 radiation 40 43200 < th dose independent rect. 13 8
415 469.07 radiation 40 43200 < th dose independent rect. 13 16
419 469.08 radiation 40 43200 < th dose independent rect. 13 14
421 469.08 radiation 1 14400 < th dose dependent rect. 6 10
439 469.21 radiation 40 43200 < th dose dependent rect. 17 15
476 469.40 humidity 90 14400 > th dose dependent rect. 4 2
548 469.87 wind 1 43200 < th dose dependent rect. 22 4
549 469.88 radiation 40 43200 < th dose dependent rect. 7 1
551 469.91 temperature 15 43200 < th dose independent sin 11 NA
554 469.92 temperature 15 43200 > th dose independent sin 12 NA
561 469.94 wind 1 43200 < th dose dependent rect. 20 6
566 469.97 radiation 40 43200 < th dose dependent rect. 15 18
577 470.06 radiation 10 43200 < th dose independent rect. 15 2
600 470.18 atmosphere 1015 43200 > th dose independent rect. 14 2
605 470.21 radiation 40 43200 < th dose independent sin 14 NA
618 470.28 temperature 15 43200 < th dose independent rect. 22 14
628 470.34 radiation 40 43200 < th dose dependent rect. 2 6
663 470.49 temperature 15 43200 > th dose independent rect. 22 14
667 470.50 wind 1 43200 < th dose dependent rect. 23 2
694 470.63 temperature 15 43200 > th dose independent rect. 22 16
704 470.67 radiation 1 43200 > th dose dependent sin 12 NA
752 470.89 radiation 40 43200 < th dose dependent sin 12 NA
759 470.91 radiation 1 43200 > th dose dependent rect. 5 3
791 471.00 temperature 15 43200 > th dose independent rect. 11 17
855 471.20 humidity 60 43200 < th dose dependent rect. 7 2
893 471.31 radiation 10 43200 < th dose independent rect. 13 6
906 471.32 radiation 10 43200 < th dose independent rect. 13 15
984 471.47 radiation 20 43200 < th dose independent rect. 2 4