FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0753900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0541) R2 : 0.0177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.327 (0.114) R2dN8 : 0.0229 R2N8 : 0.0177
σ : 1.02
deviance : 477.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.95 0.972 4 -1.13 0.52 28.5 -1.43 -103 -0.395 5.7 0.4537 106 -- --
438.82 0.976 3.86 -0.658 0.633 3.81 -1.76 -- -0.266 5.55 1.841 118 -- --
432.77 0.969 3.99 -1.14 0.523 28.5 -- -103 -0.392 6 0.4712 102 -- --
438.09 0.975 3.85 -0.631 0.542 3.98 -- -- -0.392 6.07 1.5 138 -- --
446.6 0.984 4 -1.13 -- 28 -- -102 -0.37 -- 0.4503 105 -- --
450.19 0.995 3.85 -0.577 0.492 -- -1.59 -- -0.408 5.72 -- -- -- --
456.35 1 3.85 -0.586 0.485 -- -- -- -0.401 6.01 -- -- -- --
453.09 0.991 3.85 -0.611 -- 3.6 -- -- -0.38 -- 1.5 125 -- --
448.6 0.986 3.83 -- 0.528 3.77 -- -- -0.322 6.12 1.5 135 -- --
468.54 1.01 3.86 -0.572 -- -- -- -- -0.39 -- -- -- -- --
465.39 1.01 3.83 -- 0.476 -- -- -- -0.336 6.07 -- -- -- --
462.98 1 3.84 -- -- 3.45 -- -- -0.313 -- 1.5 127 -- --
477.16 1.02 3.84 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 423.18 precipitation 0.1 90 > th dose dependent rect. 7 13
3 423.26 precipitation 0.1 90 > th dose dependent rect. 10 10
6 423.58 precipitation 0.1 90 > th dose independent rect. 10 10
26 424.41 precipitation 0.1 90 > th dose independent rect. 10 8
37 425.58 precipitation 0.1 90 > th dose dependent sin 21 NA
46 426.46 precipitation 0.1 90 > th dose dependent rect. 13 7
52 426.96 radiation 1.0 90 < th dose independent rect. 8 3
53 426.96 radiation 1.0 90 < th dose dependent rect. 8 3
57 427.21 precipitation 0.1 90 > th dose independent rect. 13 7
63 427.26 precipitation 0.1 90 > th dose independent rect. 15 5
72 427.52 precipitation 0.1 90 > th dose dependent rect. 7 18
77 427.62 precipitation 0.1 90 > th dose dependent rect. 10 15
108 428.13 precipitation 0.1 90 > th dose dependent rect. 17 1
109 428.17 precipitation 0.1 90 > th dose independent rect. 17 1
152 428.24 precipitation 0.1 10 > th dose independent rect. 17 1
180 428.24 precipitation 0.1 10 > th dose dependent rect. 17 1
217 428.52 precipitation 0.1 90 > th dose independent sin 21 NA
219 428.56 precipitation 0.1 90 < th dose independent sin 21 NA
220 428.56 precipitation 0.1 90 < th dose dependent sin 21 NA
245 429.66 radiation 10.0 14400 < th dose dependent rect. 12 1
295 430.35 precipitation 0.1 90 > th dose dependent rect. 13 12
307 430.63 atmosphere 1000.0 90 < th dose independent rect. 16 1
332 431.15 humidity 70.0 14400 < th dose dependent rect. 12 1
333 431.32 precipitation 0.1 10 > th dose independent rect. 17 7
353 431.32 precipitation 0.1 10 > th dose dependent rect. 17 7
426 431.73 atmosphere 1000.0 90 < th dose dependent rect. 16 1
433 431.91 radiation 30.0 1440 > th dose independent rect. 12 1
435 431.96 humidity 50.0 14400 > th dose independent rect. 17 16
462 432.26 radiation 40.0 1440 < th dose dependent rect. 12 1
480 432.51 humidity 80.0 10 < th dose independent rect. 22 3
481 432.55 atmosphere 1000.0 90 < th dose independent rect. 16 6
483 432.61 humidity 80.0 90 < th dose independent rect. 24 1
485 432.61 humidity 80.0 10 < th dose independent rect. 24 2
489 432.61 humidity 80.0 90 < th dose dependent rect. 24 1
490 432.61 humidity 80.0 10 < th dose dependent rect. 24 2
496 432.65 humidity 50.0 14400 > th dose independent rect. 17 5
499 432.74 humidity 50.0 14400 > th dose independent rect. 17 14
504 432.76 humidity 50.0 14400 > th dose independent rect. 17 11
512 432.88 radiation 20.0 1440 < th dose independent rect. 12 1
515 432.91 humidity 50.0 14400 < th dose independent rect. 17 16
517 433.05 precipitation 0.1 10 < th dose independent sin 20 NA
518 433.05 precipitation 0.1 10 < th dose dependent sin 20 NA
520 433.06 humidity 80.0 720 < th dose independent rect. 24 1
523 433.06 humidity 80.0 720 < th dose dependent rect. 24 1
525 433.10 precipitation 0.1 10 > th dose independent sin 20 NA
526 433.10 precipitation 0.1 10 > th dose dependent sin 20 NA
531 433.16 humidity 50.0 14400 < th dose dependent rect. 17 16
532 433.19 precipitation 0.1 90 > th dose independent rect. 6 18
541 433.31 radiation 10.0 1440 > th dose dependent rect. 12 1
542 433.32 precipitation 0.1 90 > th dose independent rect. 10 14
577 433.65 radiation 40.0 1440 < th dose independent rect. 12 1
582 433.73 humidity 70.0 14400 < th dose dependent rect. 19 1
587 433.80 precipitation 0.1 90 > th dose dependent rect. 22 20
616 434.12 wind 9.0 10 > th dose independent rect. 10 2
647 434.17 radiation 40.0 14400 < th dose independent rect. 14 1
654 434.23 humidity 70.0 14400 > th dose independent rect. 10 1
674 434.41 humidity 50.0 14400 < th dose dependent rect. 17 1
720 434.56 humidity 60.0 14400 > th dose independent rect. 12 1
723 434.62 humidity 50.0 14400 > th dose independent rect. 14 2
732 434.68 precipitation 0.1 90 < th dose independent sin 0 NA
733 434.68 precipitation 0.1 90 < th dose dependent sin 0 NA
735 434.69 radiation 40.0 4320 > th dose dependent rect. 12 2
741 434.73 radiation 40.0 14400 < th dose independent rect. 14 8
748 434.74 radiation 40.0 14400 < th dose independent rect. 14 14
749 434.74 radiation 40.0 14400 < th dose independent rect. 14 17
775 434.84 radiation 30.0 14400 > th dose independent rect. 14 1
776 434.84 wind 9.0 1440 > th dose dependent rect. 15 1
779 434.87 wind 1.0 14400 > th dose independent rect. 20 5
784 434.90 temperature 10.0 90 > th dose dependent rect. 1 15
793 434.95 radiation 20.0 14400 > th dose independent rect. 12 3
796 434.97 radiation 20.0 14400 < th dose independent rect. 12 2
799 435.00 atmosphere 1010.0 1440 < th dose independent rect. 10 1
805 435.05 radiation 1.0 14400 > th dose dependent rect. 14 1
806 435.06 humidity 50.0 14400 < th dose independent rect. 14 2
814 435.11 humidity 50.0 14400 > th dose independent rect. 14 19
839 435.20 wind 5.0 720 > th dose independent rect. 1 4
844 435.22 humidity 70.0 14400 < th dose independent rect. 11 1
848 435.23 humidity 50.0 14400 > th dose independent rect. 14 4
849 435.23 humidity 50.0 14400 > th dose independent rect. 14 8
856 435.24 humidity 50.0 14400 > th dose independent rect. 14 15
866 435.27 humidity 50.0 14400 < th dose independent rect. 17 1
882 435.27 radiation 40.0 14400 > th dose dependent rect. 14 19
884 435.28 humidity 70.0 10 > th dose independent rect. 21 16
891 435.30 temperature 10.0 30 > th dose dependent rect. 1 20
892 435.31 radiation 30.0 14400 > th dose independent rect. 14 18
899 435.34 humidity 50.0 14400 < th dose independent rect. 14 19
902 435.35 radiation 40.0 14400 > th dose dependent rect. 14 1
906 435.35 radiation 40.0 4320 > th dose dependent rect. 12 20
908 435.36 radiation 30.0 14400 > th dose independent rect. 12 20
929 435.37 humidity 50.0 14400 > th dose independent rect. 12 6
947 435.42 humidity 50.0 14400 > th dose independent rect. 12 17
965 435.44 humidity 50.0 14400 < th dose independent rect. 14 4