Os02g0753700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os02g0753700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.6 | 0.45 | 6.33 | 2.53 | 1.76 | -1.51 | 0.146 | 2.99 | 0.687 | 7.07 | 25.09 | 897 | -- | -- |
| 98.53 | 0.462 | 6.37 | 2.22 | 1.98 | -1.19 | 0.469 | -- | 0.625 | 6.99 | 25.49 | 1023 | -- | -- |
| 91.64 | 0.446 | 6.33 | 2.52 | 1.76 | -1.5 | -- | 2.9 | 0.678 | 7.07 | 25.11 | 898 | -- | -- |
| 94.39 | 0.452 | 6.4 | 1.96 | 1.85 | -1.14 | -- | -- | 0.552 | 7.14 | 25.37 | 931 | -- | -- |
| 177.54 | 0.621 | 6.31 | 3.03 | -- | -2.95 | -- | 5.34 | 0.923 | -- | 24.6 | 621 | -- | -- |
| 129.39 | 0.533 | 6.41 | 1.67 | 2.11 | -- | -0.0244 | -- | 0.449 | 7.49 | -- | -- | -- | -- |
| 129.39 | 0.533 | 6.41 | 1.66 | 2.11 | -- | -- | -- | 0.449 | 7.49 | -- | -- | -- | -- |
| 187.41 | 0.638 | 6.41 | 2.18 | -- | -2.51 | -- | -- | 0.709 | -- | 24.5 | 603 | -- | -- |
| 187.69 | 0.638 | 6.47 | -- | 1.95 | -0.742 | -- | -- | 0.218 | 7.3 | 27.8 | 871 | -- | -- |
| 366.69 | 0.895 | 6.46 | 1.7 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 202.43 | 0.666 | 6.45 | -- | 2.12 | -- | -- | -- | 0.264 | 7.43 | -- | -- | -- | -- |
| 307.72 | 0.817 | 6.48 | -- | -- | -2.14 | -- | -- | 0.419 | -- | 24.8 | 576 | -- | -- |
| 442.65 | 0.982 | 6.5 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 8 | 91.71 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 12 | 92.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 21 | 93.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 32 | 93.85 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 42 | 94.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 63 | 94.39 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 6 |
| 64 | 94.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 71 | 94.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 82 | 94.48 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 101 | 94.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 123 | 94.85 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 19 |
| 180 | 95.24 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 214 | 95.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 216 | 95.70 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 10 |
| 217 | 95.71 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 6 |
| 234 | 96.09 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 18 |
| 273 | 96.57 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 290 | 96.87 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 18 |
| 291 | 96.87 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 19 |
| 319 | 97.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 335 | 97.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 348 | 97.58 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 351 | 97.61 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 361 | 97.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 366 | 97.75 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 373 | 97.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 388 | 97.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 391 | 97.87 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 393 | 97.87 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 394 | 97.88 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 405 | 97.92 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 406 | 97.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 418 | 97.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 421 | 97.98 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 427 | 98.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 437 | 98.01 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 445 | 98.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 457 | 98.04 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 459 | 98.04 | temperature | 30 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 462 | 98.05 | temperature | 30 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 532 | 98.12 | temperature | 30 | 14400 | > th | dose dependent | sin | 7 | NA |
| 546 | 98.15 | temperature | 25 | 14400 | > th | dose dependent | sin | 10 | NA |
| 564 | 98.16 | temperature | 30 | 14400 | < th | dose independent | sin | 8 | NA |
| 587 | 98.22 | temperature | 30 | 14400 | > th | dose independent | sin | 8 | NA |
| 692 | 98.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 694 | 98.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 17 |
| 706 | 98.36 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 708 | 98.36 | temperature | 30 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 895 | 98.41 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 919 | 98.43 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 920 | 98.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 991 | 98.50 | temperature | 25 | 1440 | > th | dose dependent | sin | 6 | NA |
| 1000 | 98.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |