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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0752200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-D-xylosidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.0307) R2 : 0.00353
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.082 (0.0645) R2dN8 : 0.00455 R2N8 : 0.00353
σ : 0.577
deviance : 152.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.38 0.567 3.47 0.222 0.00641 -0.531 0.519 2.71 0.0086 16.4 25 84 -- --
147.27 0.57 3.5 -0.0854 0.0176 -0.365 -0.896 -- -0.0443 4.06 20.5 240 -- --
145.98 0.563 3.46 0.297 0.0116 -0.557 -- 3.28 0.0284 16.1 25 84 -- --
148.43 0.567 3.5 -0.0217 0.176 -0.322 -- -- -0.0353 4.2 18.84 2584 -- --
145.98 0.563 3.46 0.286 -- -0.544 -- 3.24 0.0257 -- 25 84 -- --
149.48 0.573 3.51 -0.158 0.151 -- -0.81 -- -0.106 4.33 -- -- -- --
151.25 0.576 3.51 -0.15 0.15 -- -- -- -0.102 5.01 -- -- -- --
149.23 0.569 3.49 0.0398 -- -0.349 -- -- 0.0207 -- 18.59 7534 -- --
148.2 0.567 3.49 -- 0.162 -0.346 -- -- -0.0246 4.5 17.9 5339 -- --
152.43 0.577 3.51 -0.145 -- -- -- -- -0.0981 -- -- -- -- --
151.84 0.576 3.51 -- 0.147 -- -- -- -0.0852 5.05 -- -- -- --
149.25 0.569 3.49 -- -- -0.338 -- -- 0.0079 -- 17.9 7556 -- --
152.98 0.577 3.51 -- -- -- -- -- -0.082 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.52 humidity 90.0 30 > th dose independent rect. 13 3
5 130.54 humidity 90.0 30 > th dose dependent rect. 13 3
9 130.66 humidity 90.0 30 > th dose independent rect. 13 1
15 130.66 precipitation 0.1 30 > th dose independent rect. 7 7
23 130.66 humidity 90.0 30 > th dose dependent rect. 13 1
27 130.66 precipitation 0.1 30 > th dose dependent rect. 7 7
38 130.72 precipitation 0.1 90 > th dose independent rect. 13 1
49 130.72 precipitation 0.1 90 > th dose dependent rect. 13 1
177 136.91 radiation 1.0 43200 < th dose dependent rect. 3 1
184 138.35 temperature 25.0 90 > th dose dependent rect. 1 1
186 138.52 temperature 25.0 90 > th dose independent rect. 1 1
189 138.75 atmosphere 1005.0 90 > th dose dependent rect. 2 1
191 138.78 atmosphere 995.0 30 > th dose independent rect. 3 23
197 138.95 humidity 50.0 10 > th dose independent rect. 3 23
205 139.04 wind 3.0 30 < th dose independent rect. 2 1
209 139.07 atmosphere 1005.0 30 > th dose independent rect. 2 1
211 139.08 wind 3.0 30 < th dose dependent rect. 2 1
218 139.10 wind 9.0 1440 < th dose independent rect. 3 1
219 139.10 temperature 10.0 1440 > th dose independent rect. 3 1
222 139.10 temperature 30.0 1440 < th dose independent rect. 3 1
226 139.10 humidity 50.0 1440 > th dose independent rect. 3 1
235 139.10 atmosphere 995.0 1440 > th dose independent rect. 3 1
236 139.10 radiation 1.0 1440 < th dose independent rect. 3 1
256 139.10 temperature 10.0 1440 > th dose independent rect. 4 23
274 139.17 temperature 10.0 30 > th dose independent rect. 2 1
276 139.17 temperature 30.0 30 < th dose independent rect. 2 1
277 139.17 humidity 50.0 30 > th dose independent rect. 2 1
280 139.17 atmosphere 995.0 30 > th dose independent rect. 2 1
281 139.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
283 139.17 radiation 1.0 30 < th dose independent rect. 2 1
288 139.17 precipitation 0.1 30 < th dose independent rect. 2 1
289 139.17 temperature 10.0 30 > th dose independent rect. 3 23
290 139.17 radiation 1.0 30 < th dose dependent rect. 2 1
295 139.17 precipitation 0.1 30 < th dose dependent rect. 2 1
296 139.18 humidity 50.0 30 > th dose dependent rect. 2 1
299 139.20 precipitation 0.1 30 < th dose independent rect. 3 23
301 139.20 precipitation 0.1 30 < th dose dependent rect. 3 23
305 139.22 precipitation 0.1 720 < th dose independent rect. 15 8
306 139.22 precipitation 0.1 720 < th dose dependent rect. 15 8
309 139.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
319 139.33 temperature 30.0 30 < th dose dependent rect. 2 1
321 139.38 wind 1.0 30 > th dose independent rect. 2 1
322 139.38 humidity 60.0 30 > th dose independent rect. 13 1
331 139.50 radiation 30.0 10 < th dose independent rect. 14 1
335 139.53 humidity 50.0 30 > th dose dependent rect. 13 1
343 139.61 wind 9.0 30 < th dose independent rect. 3 23
387 140.03 precipitation 0.1 720 < th dose independent rect. 11 16
388 140.03 precipitation 0.1 720 < th dose dependent rect. 11 16
396 140.24 humidity 50.0 720 > th dose independent rect. 3 8
405 140.31 temperature 10.0 720 > th dose independent rect. 15 8
406 140.31 temperature 10.0 720 > th dose independent rect. 23 16
407 140.32 temperature 10.0 720 > th dose independent rect. 3 8
408 140.32 atmosphere 995.0 720 > th dose independent rect. 3 8
409 140.32 temperature 10.0 720 > th dose independent rect. 11 16
413 140.43 wind 9.0 720 < th dose independent rect. 3 8
415 140.45 atmosphere 995.0 720 > th dose independent rect. 23 16
426 140.60 atmosphere 1005.0 10 > th dose independent rect. 13 1
465 141.15 atmosphere 995.0 720 > th dose independent rect. 15 8
469 141.22 temperature 25.0 270 > th dose independent rect. 23 4
471 141.23 atmosphere 995.0 720 > th dose independent rect. 11 16
478 141.32 temperature 10.0 30 > th dose dependent rect. 3 23
500 141.58 temperature 30.0 10 < th dose independent rect. 13 1
503 141.62 temperature 30.0 90 < th dose independent rect. 13 1
566 141.89 temperature 30.0 90 < th dose dependent rect. 13 1
584 142.04 radiation 40.0 90 < th dose independent rect. 12 15
589 142.13 radiation 40.0 90 < th dose dependent rect. 13 1
593 142.19 wind 9.0 30 < th dose dependent rect. 3 23
616 142.39 atmosphere 1000.0 10 > th dose dependent rect. 13 1
617 142.40 precipitation 0.1 720 < th dose independent rect. 3 8
618 142.40 precipitation 0.1 720 < th dose dependent rect. 3 8
620 142.45 wind 1.0 720 < th dose independent rect. 7 1
626 142.50 humidity 70.0 4320 > th dose independent rect. 22 5
627 142.50 wind 9.0 720 < th dose independent rect. 15 8
631 142.51 temperature 20.0 720 > th dose dependent rect. 3 3
633 142.54 temperature 25.0 10 < th dose independent rect. 2 16
642 142.61 atmosphere 1015.0 720 < th dose independent rect. 3 8
650 142.73 temperature 25.0 720 > th dose independent rect. 3 7
656 142.78 wind 5.0 14400 < th dose independent rect. 11 1
658 142.78 temperature 20.0 720 > th dose dependent rect. 3 1
662 142.83 precipitation 0.1 720 < th dose independent rect. 23 16
663 142.83 precipitation 0.1 720 < th dose dependent rect. 23 16
666 142.87 temperature 25.0 720 < th dose independent rect. 5 7
679 142.97 wind 1.0 720 < th dose dependent rect. 7 1
684 142.99 radiation 20.0 720 > th dose independent rect. 16 1
695 142.99 temperature 25.0 720 < th dose independent rect. 2 10
703 143.01 atmosphere 1005.0 90 > th dose dependent rect. 24 6
708 143.05 wind 5.0 14400 > th dose independent rect. 11 1
710 143.07 temperature 25.0 10 < th dose independent rect. 2 14
713 143.08 temperature 15.0 90 > th dose dependent rect. 3 8
725 143.14 humidity 50.0 720 > th dose independent rect. 23 16
734 143.22 wind 1.0 720 > th dose independent rect. 15 8
736 143.23 temperature 25.0 10 < th dose independent rect. 2 11
745 143.27 radiation 40.0 10 < th dose dependent rect. 13 1
746 143.27 temperature 20.0 720 > th dose dependent rect. 3 7
748 143.28 radiation 40.0 30 < th dose independent rect. 13 13
750 143.28 wind 3.0 14400 > th dose dependent rect. 11 1
755 143.29 wind 5.0 14400 < th dose independent rect. 9 4
757 143.30 radiation 10.0 720 < th dose independent rect. 21 9
769 143.34 humidity 90.0 90 < th dose independent rect. 2 1
777 143.35 wind 3.0 14400 > th dose dependent rect. 9 3
782 143.38 wind 7.0 720 < th dose independent rect. 14 15
783 143.38 atmosphere 995.0 720 > th dose dependent rect. 13 2
789 143.39 radiation 40.0 30 < th dose independent rect. 3 23
793 143.40 temperature 25.0 720 > th dose dependent rect. 3 5
797 143.42 temperature 25.0 720 < th dose independent rect. 7 1
833 143.47 humidity 80.0 43200 < th dose dependent rect. 8 1
835 143.48 wind 5.0 14400 > th dose independent rect. 9 6
838 143.49 wind 5.0 14400 > th dose independent rect. 9 4
848 143.53 precipitation 0.1 14400 > th dose independent rect. 1 7
851 143.53 radiation 10.0 720 > th dose dependent rect. 15 16
857 143.56 radiation 10.0 30 < th dose independent rect. 3 23
858 143.56 wind 7.0 14400 < th dose dependent rect. 11 1
862 143.58 precipitation 0.1 14400 < th dose independent rect. 1 7
865 143.58 precipitation 0.1 14400 < th dose dependent rect. 1 7
867 143.60 humidity 70.0 4320 > th dose independent rect. 20 1
869 143.61 humidity 70.0 43200 < th dose independent rect. 21 13
874 143.62 humidity 70.0 4320 > th dose independent rect. 21 7
877 143.63 precipitation 0.1 4320 < th dose independent rect. 15 1
879 143.63 precipitation 0.1 4320 < th dose dependent rect. 15 1
884 143.64 humidity 90.0 270 < th dose independent rect. 24 6
887 143.64 precipitation 0.1 14400 > th dose dependent rect. 1 7
912 143.70 humidity 70.0 4320 > th dose independent rect. 20 3
915 143.71 radiation 1.0 720 < th dose independent rect. 8 1
918 143.71 radiation 1.0 720 < th dose dependent rect. 8 1
954 143.80 precipitation 0.1 4320 > th dose independent rect. 15 1
958 143.80 radiation 40.0 720 < th dose independent rect. 15 8
961 143.80 radiation 10.0 720 > th dose dependent rect. 15 1
962 143.80 precipitation 0.1 4320 > th dose dependent rect. 15 1
971 143.83 wind 7.0 1440 < th dose independent rect. 12 1
972 143.83 humidity 90.0 43200 > th dose independent rect. 4 4
974 143.83 humidity 60.0 30 > th dose independent rect. 13 13