Os02g0750200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0750200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.4 | 0.353 | 16 | -1.56 | 0.818 | -0.906 | 0.752 | -0.229 | -0.55 | 20.6 | 29.6 | 4359 | -- | -- |
| 56.02 | 0.349 | 16.1 | -1.6 | 0.822 | -0.954 | 0.757 | -- | -0.62 | 20.6 | 29.2 | 4346 | -- | -- |
| 57.86 | 0.354 | 16 | -1.55 | 0.814 | -0.902 | -- | -0.393 | -0.608 | 20.6 | 29.22 | 4345 | -- | -- |
| 57.86 | 0.354 | 16.1 | -1.64 | 0.813 | -0.949 | -- | -- | -0.625 | 20.6 | 29.2 | 4345 | -- | -- |
| 91.13 | 0.445 | 16 | -1.66 | -- | -1.01 | -- | -0.052 | -0.625 | -- | 29.3 | 4930 | -- | -- |
| 86.3 | 0.436 | 16.1 | -1.35 | 0.841 | -- | 0.782 | -- | -0.627 | 20.9 | -- | -- | -- | -- |
| 88.36 | 0.44 | 16.1 | -1.38 | 0.84 | -- | -- | -- | -0.627 | 20.8 | -- | -- | -- | -- |
| 91.11 | 0.445 | 16 | -1.67 | -- | -1.02 | -- | -- | -0.623 | -- | 29.29 | 4927 | -- | -- |
| 124.02 | 0.519 | 16 | -- | 0.836 | -0.616 | -- | -- | -0.346 | 20.5 | 30.4 | 4363 | -- | -- |
| 128.54 | 0.53 | 16 | -1.38 | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
| 138.21 | 0.55 | 16 | -- | 0.843 | -- | -- | -- | -0.474 | 20.7 | -- | -- | -- | -- |
| 160.05 | 0.589 | 16 | -- | -- | -0.684 | -- | -- | -0.427 | -- | 29.5 | 4955 | -- | -- |
| 178.46 | 0.624 | 16 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 6 | 56.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 9 | 56.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 11 | 56.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 12 | 56.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 14 | 56.39 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 23 | 56.49 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 30 | 56.56 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 34 | 56.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 39 | 56.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 74 | 56.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 76 | 56.74 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 112 | 56.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 126 | 56.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 127 | 56.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 152 | 56.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 154 | 56.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 156 | 56.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 166 | 56.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 170 | 56.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 173 | 56.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 177 | 56.91 | temperature | 30 | 4320 | < th | dose independent | sin | 23 | NA |
| 227 | 56.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 230 | 56.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 232 | 56.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 19 |
| 250 | 57.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 251 | 57.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 254 | 57.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 279 | 57.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 291 | 57.04 | temperature | 30 | 4320 | > th | dose independent | sin | 23 | NA |
| 351 | 57.07 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 427 | 57.09 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 469 | 57.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 501 | 57.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 10 |
| 513 | 57.18 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 515 | 57.18 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 520 | 57.19 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 622 | 57.20 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 645 | 57.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 703 | 57.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 704 | 57.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 707 | 57.27 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 719 | 57.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 739 | 57.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 923 | 57.47 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 924 | 57.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |