Os02g0749200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0749200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.02 | 0.609 | 9.5 | -1.3 | 1.66 | 1.6 | 0.362 | -5.3 | -0.688 | 19.7 | 25.5 | 611 | -- | -- |
| 173.97 | 0.614 | 9.42 | -0.608 | 1.61 | 1.39 | -0.415 | -- | -0.558 | 19.7 | 24.9 | 563 | -- | -- |
| 168.08 | 0.604 | 9.49 | -1.33 | 1.68 | 1.74 | -- | -6.33 | -0.634 | 19.9 | 26.4 | 582 | -- | -- |
| 172.92 | 0.612 | 9.42 | -0.575 | 1.72 | 1.14 | -- | -- | -0.556 | 19.8 | 24.45 | 527 | -- | -- |
| 263 | 0.755 | 9.5 | -1.66 | -- | 2.95 | -- | -6.01 | -0.92 | -- | 24.69 | 582 | -- | -- |
| 196.44 | 0.657 | 9.4 | -0.338 | 2.21 | -- | 0.208 | -- | -0.44 | 19.5 | -- | -- | -- | -- |
| 196.56 | 0.657 | 9.4 | -0.343 | 2.21 | -- | -- | -- | -0.44 | 19.5 | -- | -- | -- | -- |
| 280.43 | 0.78 | 9.4 | -0.858 | -- | 2.48 | -- | -- | -0.71 | -- | 24.47 | 564 | -- | -- |
| 180.81 | 0.626 | 9.4 | -- | 1.76 | 1.02 | -- | -- | -0.476 | 19.7 | 24.8 | 527 | -- | -- |
| 458.13 | 1 | 9.35 | -0.376 | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
| 199.66 | 0.661 | 9.4 | -- | 2.21 | -- | -- | -- | -0.402 | 19.5 | -- | -- | -- | -- |
| 298.49 | 0.805 | 9.38 | -- | -- | 2.35 | -- | -- | -0.592 | -- | 24.55 | 557 | -- | -- |
| 461.87 | 1 | 9.34 | -- | -- | -- | -- | -- | -0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 5 | 161.78 | temperature | 15 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 20 | 163.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 31 | 163.68 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 8 |
| 40 | 163.97 | temperature | 15 | 90 | > th | dose dependent | sin | 15 | NA |
| 51 | 164.40 | temperature | 15 | 270 | > th | dose dependent | sin | 17 | NA |
| 85 | 165.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 106 | 166.11 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 16 |
| 140 | 167.00 | temperature | 25 | 30 | > th | dose independent | rect. | 15 | 5 |
| 145 | 167.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 157 | 167.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 160 | 167.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 9 |
| 169 | 167.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 201 | 167.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 254 | 168.18 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 9 |
| 261 | 168.26 | temperature | 25 | 720 | > th | dose dependent | sin | 22 | NA |
| 301 | 168.53 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 21 |
| 373 | 168.91 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 8 |
| 377 | 168.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 390 | 168.98 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 7 |
| 395 | 168.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 418 | 169.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 439 | 169.17 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 440 | 169.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 484 | 169.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 533 | 169.50 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 559 | 169.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 5 |
| 587 | 169.98 | humidity | 50 | 30 | > th | dose independent | rect. | 8 | 17 |
| 609 | 170.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 611 | 170.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 621 | 170.20 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 17 |
| 624 | 170.24 | wind | 7 | 10 | < th | dose independent | rect. | 15 | 17 |
| 625 | 170.24 | wind | 1 | 30 | > th | dose independent | rect. | 8 | 19 |
| 688 | 170.67 | radiation | 40 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 717 | 170.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 718 | 170.82 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 757 | 171.00 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 794 | 171.18 | radiation | 40 | 720 | > th | dose dependent | sin | 12 | NA |
| 824 | 171.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 857 | 171.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 876 | 171.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 879 | 171.62 | radiation | 40 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 889 | 171.66 | wind | 1 | 270 | > th | dose independent | rect. | 7 | 17 |
| 946 | 171.92 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 1 | 7 |
| 992 | 172.13 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 17 |
| 993 | 172.13 | radiation | 40 | 720 | > th | dose dependent | no | NA | NA |
| 994 | 172.13 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 7 |