Os02g0748100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINT-1/TIP-1 family protein.
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Os02g0748100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINT-1/TIP-1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.67 | 0.219 | 8.48 | 1.15 | 0.0702 | -0.363 | 0.0958 | 1.4 | 0.287 | 20.8 | 27.4 | 1099 | -- | -- |
| 22.67 | 0.222 | 8.52 | 0.818 | 0.0986 | -0.293 | 0.25 | -- | 0.174 | 20.2 | 27.5 | 930 | -- | -- |
| 21.65 | 0.217 | 8.48 | 1.16 | 0.0733 | -0.364 | -- | 1.45 | 0.29 | 20.7 | 27.6 | 1098 | -- | -- |
| 22.83 | 0.223 | 8.52 | 0.795 | 0.087 | -0.267 | -- | -- | 0.176 | 20.4 | 27.5 | 966 | -- | -- |
| 21.92 | 0.218 | 8.47 | 1.2 | -- | -0.339 | -- | 1.54 | 0.285 | -- | 28 | 1198 | -- | -- |
| 24.51 | 0.232 | 8.53 | 0.726 | 0.022 | -- | 0.205 | -- | 0.13 | 19 | -- | -- | -- | -- |
| 24.58 | 0.232 | 8.53 | 0.723 | 0.0342 | -- | -- | -- | 0.131 | 16 | -- | -- | -- | -- |
| 23.07 | 0.224 | 8.52 | 0.802 | -- | -0.242 | -- | -- | 0.178 | -- | 27.31 | 1087 | -- | -- |
| 38.26 | 0.29 | 8.55 | -- | 0.0119 | 0.0396 | -- | -- | 0.045 | 23.7 | 27.5 | 966 | -- | -- |
| 24.64 | 0.232 | 8.53 | 0.721 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 38.35 | 0.29 | 8.55 | -- | 0.0203 | -- | -- | -- | 0.0505 | 16.5 | -- | -- | -- | -- |
| 30.19 | 0.256 | 8.57 | -- | -- | 0.445 | -- | -- | -0.0376 | -- | 18.36 | 47520 | -- | -- |
| 38.37 | 0.289 | 8.55 | -- | -- | -- | -- | -- | 0.0501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 20.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 3 | 20.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 37 | 21.22 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 59 | 21.42 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 80 | 21.56 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 83 | 21.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 10 |
| 87 | 21.67 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 7 |
| 98 | 21.71 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 3 |
| 103 | 21.71 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 125 | 21.79 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 136 | 21.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 12 |
| 162 | 21.93 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 175 | 21.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 188 | 21.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 206 | 22.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 225 | 22.05 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 283 | 22.16 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 301 | 22.20 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 16 |
| 317 | 22.23 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 318 | 22.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 332 | 22.25 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 340 | 22.26 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 346 | 22.27 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 20 |
| 355 | 22.28 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 15 |
| 358 | 22.28 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 378 | 22.30 | humidity | 60 | 720 | < th | dose independent | rect. | 17 | 1 |
| 464 | 22.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 476 | 22.34 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 8 |
| 485 | 22.35 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 15 |
| 542 | 22.38 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 7 |
| 599 | 22.40 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 733 | 22.44 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 764 | 22.46 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 798 | 22.47 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 17 |
| 811 | 22.48 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 929 | 22.52 | temperature | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 989 | 22.54 | humidity | 60 | 720 | < th | dose independent | sin | 11 | NA |