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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0745300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC-domain protein 485.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0415) R2 : 0.0831
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.12 (0.177) R2dE : 0.087 R2E : 0.0821
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0542 (0.0903) R2dN8 : 0.00101 R2N8 : -0.00389
σ : 0.773
deviance : 275.59
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.74
memory length : 1190
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.71 0.772 3.38 0.254 0.503 -1.45 0.352 1.14 0.133 18 8.741 581 -- --
270.58 0.766 3.4 0.0963 0.498 -1.45 0.576 -- 0.0943 18 12.72 572 -- --
269.95 0.765 3.37 0.284 0.512 -1.45 -- 1.37 0.143 17.9 9.333 560 -- --
271.32 0.767 3.4 0.0477 0.525 -1.42 -- -- 0.0795 17.8 9.86 546 -- --
274.11 0.771 3.36 0.327 -- -1.16 -- 1.3 0.136 -- 4.162 1171 -- --
294.93 0.805 3.44 -0.286 0.208 -- 0.127 -- -0.135 15.5 -- -- -- --
294.97 0.804 3.44 -0.284 0.208 -- -- -- -0.134 15.4 -- -- -- --
275.52 0.773 3.39 0.053 -- -1.14 -- -- 0.0632 -- 6.634 1193 -- --
271.36 0.767 3.4 -- 0.529 -1.41 -- -- 0.0718 17.7 10.6 524 -- --
297.4 0.806 3.44 -0.292 -- -- -- -- -0.139 -- -- -- -- --
297.09 0.806 3.43 -- 0.213 -- -- -- -0.102 15.4 -- -- -- --
275.59 0.773 3.4 -- -- -1.12 -- -- 0.0542 -- 10.74 1190 -- --
299.66 0.808 3.43 -- -- -- -- -- -0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 268.50 temperature 10 720 > th dose dependent rect. 11 22
4 268.91 temperature 10 720 > th dose dependent rect. 19 22
6 269.03 temperature 25 1440 < th dose independent rect. 16 1
13 269.46 temperature 25 1440 > th dose independent rect. 15 2
16 269.55 temperature 30 270 < th dose dependent rect. 7 21
33 269.88 temperature 10 720 > th dose dependent rect. 4 19
41 269.96 temperature 10 720 > th dose dependent rect. 1 23
44 270.04 temperature 10 720 > th dose dependent rect. 4 22
77 270.42 temperature 25 1440 < th dose independent rect. 1 17
84 270.47 temperature 10 720 > th dose dependent no NA NA
86 270.49 temperature 25 1440 < th dose independent rect. 5 12
89 270.49 temperature 15 720 > th dose dependent rect. 8 23
101 270.57 temperature 25 720 < th dose dependent rect. 6 17
117 270.64 temperature 10 720 > th dose dependent rect. 14 19
143 270.76 temperature 30 270 < th dose dependent rect. 15 21
144 270.76 temperature 15 720 > th dose dependent rect. 14 23
145 270.77 temperature 25 1440 > th dose independent rect. 5 12
149 270.79 temperature 30 720 < th dose dependent rect. 13 22
156 270.81 temperature 30 720 < th dose dependent rect. 22 23
216 271.12 temperature 25 1440 < th dose independent sin 1 NA
223 271.14 temperature 30 720 < th dose dependent no NA NA
278 271.32 temperature 30 720 < th dose dependent rect. 20 23
319 271.49 temperature 30 720 < th dose dependent rect. 2 23
390 271.70 temperature 25 1440 > th dose independent sin 1 NA
685 272.43 temperature 10 720 > th dose dependent rect. 11 15
708 272.46 radiation 1 4320 < th dose dependent rect. 23 6
709 272.46 temperature 25 1440 < th dose dependent rect. 14 13
733 272.49 temperature 25 1440 < th dose dependent sin 18 NA
740 272.50 temperature 25 1440 < th dose independent rect. 7 20
850 272.65 temperature 25 1440 < th dose independent rect. 20 22
887 272.70 temperature 25 1440 < th dose dependent sin 1 NA