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Os02g0745200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.31 (0.0315) R2 : 0.75
β1 : 1.29 (0.115) R2dD : 0.0716 R2D : 0.0159
β2 : 2.53 (0.0776) R2dC : 0.585 R2C : 0.539
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.067) R2dN8 : 0.177 R2N8 : 0.0923
σ : 0.591
deviance : 159.1
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_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.26 0.568 7.22 1.27 2.53 -0.355 0.0341 4.08 1.06 21.2 0.383 4202 -- --
150.23 0.571 7.28 1.12 2.46 0.595 -0.0325 -- 1.08 21.3 0.4979 15880 -- --
145.04 0.561 7.13 1.64 2.5 -1.39 -- 7.94 1.05 21.1 0.4839 3826 -- --
149.61 0.57 7.3 1.09 2.53 0.628 -- -- 1.11 21.2 0.5 17244 -- --
512.72 1.05 7.06 1.68 -- -1.4 -- 8.22 1.07 -- 0.6262 3012 -- --
159.09 0.591 7.31 1.29 2.53 -- 0.0449 -- 1.04 21.2 -- -- -- --
159.1 0.591 7.31 1.29 2.53 -- -- -- 1.04 21.2 -- -- -- --
519.24 1.06 7.23 0.974 -- 0.767 -- -- 1.16 -- 0.5023 16260 -- --
169.8 0.607 7.3 -- 2.52 1.03 -- -- 1.07 21.2 0.7951 23299 -- --
529.85 1.08 7.24 1.3 -- -- -- -- 1.03 -- -- -- -- --
203.05 0.667 7.34 -- 2.53 -- -- -- 0.899 21.2 -- -- -- --
539.09 1.08 7.23 -- -- 1.06 -- -- 1.07 -- 0.872 23544 -- --
574.43 1.12 7.27 -- -- -- -- -- 0.886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.08 temperature 10.0 90 > th dose dependent rect. 12 18
2 140.45 temperature 25.0 270 > th dose independent rect. 10 6
18 141.87 wind 9.0 90 < th dose independent rect. 12 18
19 141.97 temperature 25.0 10 > th dose independent rect. 12 7
21 142.13 radiation 1.0 90 > th dose independent rect. 6 6
25 142.57 atmosphere 1000.0 90 > th dose independent rect. 6 6
26 142.72 temperature 15.0 30 > th dose dependent rect. 12 7
30 142.82 precipitation 0.1 4320 > th dose dependent rect. 24 17
31 142.83 temperature 10.0 90 > th dose independent rect. 6 6
33 142.83 atmosphere 1015.0 90 < th dose independent rect. 6 6
34 142.83 precipitation 0.1 90 < th dose independent rect. 6 6
35 142.83 temperature 10.0 90 > th dose independent rect. 12 18
36 142.83 precipitation 0.1 90 < th dose dependent rect. 6 6
39 142.90 wind 9.0 90 < th dose independent rect. 6 6
42 143.05 wind 1.0 90 > th dose independent rect. 12 18
48 143.11 temperature 15.0 270 > th dose dependent rect. 10 6
50 143.11 temperature 10.0 270 > th dose dependent rect. 9 21
53 143.18 temperature 10.0 270 > th dose dependent rect. 9 8
56 143.23 humidity 50.0 90 > th dose independent rect. 6 6
65 143.41 precipitation 0.1 4320 > th dose dependent rect. 1 13
66 143.42 temperature 10.0 1440 > th dose independent rect. 7 6
69 143.42 atmosphere 995.0 1440 > th dose independent rect. 7 6
70 143.42 temperature 10.0 1440 > th dose independent rect. 13 18
79 143.47 wind 1.0 30 > th dose independent rect. 6 6
90 143.53 precipitation 0.1 4320 < th dose independent rect. 24 17
93 143.53 precipitation 0.1 4320 < th dose dependent rect. 24 17
98 143.58 wind 3.0 43200 < th dose dependent rect. 5 2
99 143.59 wind 9.0 270 < th dose independent rect. 9 22
100 143.60 precipitation 0.1 4320 > th dose independent rect. 24 17
104 143.62 radiation 1.0 90 > th dose independent rect. 4 8
116 143.66 atmosphere 995.0 90 > th dose independent rect. 12 18
117 143.66 wind 1.0 43200 < th dose dependent rect. 22 9
120 143.69 precipitation 0.1 4320 > th dose dependent sin 4 NA
121 143.69 atmosphere 995.0 90 > th dose dependent rect. 6 6
125 143.72 radiation 1.0 30 > th dose dependent rect. 6 6
156 143.85 precipitation 0.1 4320 > th dose dependent rect. 3 7
159 143.86 wind 1.0 43200 < th dose dependent rect. 23 14
162 143.88 precipitation 0.1 90 < th dose independent rect. 12 18
163 143.88 precipitation 0.1 90 < th dose dependent rect. 12 18
189 144.01 precipitation 0.1 14400 > th dose independent rect. 4 13
190 144.01 wind 1.0 43200 < th dose dependent sin 8 NA
196 144.03 precipitation 0.1 14400 < th dose independent rect. 4 13
198 144.03 precipitation 0.1 14400 < th dose dependent rect. 4 13
202 144.04 wind 1.0 43200 < th dose dependent rect. 20 11
213 144.10 precipitation 0.1 10 < th dose independent rect. 12 18
215 144.10 precipitation 0.1 10 < th dose dependent rect. 12 18
220 144.12 wind 1.0 43200 < th dose dependent rect. 4 9
244 144.22 precipitation 0.1 4320 > th dose dependent rect. 1 9
253 144.24 precipitation 0.1 4320 > th dose independent rect. 3 6
254 144.24 precipitation 0.1 14400 < th dose independent rect. 7 10
257 144.24 precipitation 0.1 14400 < th dose dependent rect. 7 10
272 144.30 precipitation 0.1 14400 > th dose independent rect. 7 10
273 144.31 precipitation 0.1 4320 < th dose independent rect. 3 6
275 144.31 precipitation 0.1 4320 < th dose dependent rect. 3 6
277 144.32 atmosphere 1015.0 90 < th dose independent rect. 12 18
282 144.34 precipitation 0.1 4320 > th dose independent rect. 7 1
285 144.34 precipitation 0.1 4320 > th dose dependent rect. 7 1
301 144.38 wind 1.0 1440 < th dose independent rect. 9 5
310 144.39 precipitation 0.1 4320 > th dose independent rect. 3 11
317 144.41 temperature 20.0 30 > th dose independent rect. 12 18
339 144.48 wind 1.0 43200 < th dose dependent rect. 20 17
340 144.49 wind 1.0 1440 > th dose independent rect. 12 1
354 144.50 wind 1.0 43200 < th dose dependent rect. 12 1
365 144.53 precipitation 0.1 4320 > th dose independent sin 4 NA
369 144.54 precipitation 0.1 4320 < th dose independent sin 4 NA
370 144.54 wind 9.0 43200 < th dose independent rect. 10 4
371 144.54 precipitation 0.1 4320 < th dose dependent sin 4 NA
375 144.55 wind 1.0 1440 < th dose independent rect. 9 10
380 144.56 precipitation 0.1 4320 < th dose independent rect. 7 1
384 144.56 wind 3.0 43200 < th dose dependent rect. 1 1
385 144.56 precipitation 0.1 4320 < th dose dependent rect. 7 1
386 144.57 wind 1.0 1440 < th dose independent rect. 12 2
387 144.57 wind 1.0 1440 < th dose independent rect. 9 7
391 144.58 atmosphere 1010.0 270 < th dose independent rect. 10 7
406 144.64 precipitation 0.1 1440 > th dose independent rect. 21 4
408 144.64 precipitation 0.1 1440 > th dose dependent rect. 21 4
414 144.65 wind 1.0 43200 < th dose independent rect. 22 11
416 144.65 wind 1.0 43200 < th dose dependent rect. 23 6
427 144.67 precipitation 0.1 14400 < th dose independent rect. 9 8
431 144.67 precipitation 0.1 14400 < th dose dependent rect. 9 8
434 144.70 wind 3.0 14400 < th dose independent rect. 24 1
453 144.73 temperature 25.0 270 < th dose dependent rect. 8 13
454 144.74 humidity 60.0 270 > th dose independent rect. 7 2
456 144.74 wind 1.0 43200 < th dose independent rect. 22 14
469 144.79 wind 9.0 270 < th dose independent rect. 7 2
470 144.79 temperature 10.0 270 > th dose independent rect. 7 2
473 144.79 atmosphere 995.0 270 > th dose independent rect. 7 2
474 144.79 atmosphere 1015.0 270 < th dose independent rect. 7 2
475 144.79 precipitation 0.1 270 < th dose independent rect. 7 2
477 144.79 humidity 50.0 30 > th dose independent rect. 12 18
479 144.79 temperature 10.0 270 > th dose independent rect. 9 22
480 144.79 precipitation 0.1 270 < th dose dependent rect. 7 2
482 144.80 precipitation 0.1 14400 > th dose independent rect. 9 8
493 144.83 wind 1.0 1440 < th dose dependent rect. 12 2
502 144.85 wind 1.0 1440 > th dose independent rect. 9 5
512 144.87 wind 7.0 30 < th dose independent rect. 12 7
516 144.88 wind 9.0 43200 > th dose independent rect. 10 4
527 144.91 atmosphere 1015.0 30 < th dose dependent rect. 12 7
547 144.95 wind 1.0 43200 > th dose independent rect. 22 11
550 144.96 wind 1.0 43200 > th dose independent rect. 5 4
564 144.97 wind 1.0 43200 < th dose independent rect. 22 9
577 144.99 wind 1.0 1440 < th dose dependent rect. 9 7
591 145.02 wind 9.0 14400 < th dose independent rect. 9 2
597 145.04 wind 1.0 43200 > th dose independent rect. 6 1
598 145.04 radiation 1.0 270 > th dose independent rect. 6 3
599 145.04 precipitation 0.1 4320 > th dose independent rect. 1 9
606 145.05 wind 3.0 14400 < th dose independent rect. 21 4
609 145.05 wind 1.0 1440 < th dose independent rect. 12 7
631 145.07 temperature 15.0 10 > th dose dependent rect. 12 12
643 145.10 wind 1.0 43200 < th dose independent sin 8 NA
652 145.11 temperature 25.0 720 < th dose dependent rect. 9 4
656 145.12 precipitation 0.1 1440 > th dose independent rect. 23 2
666 145.12 precipitation 0.1 1440 > th dose dependent rect. 23 2
669 145.12 precipitation 0.1 4320 > th dose dependent rect. 1 19
671 145.13 precipitation 0.1 4320 < th dose independent rect. 24 10
674 145.13 precipitation 0.1 4320 < th dose independent rect. 24 20
676 145.13 precipitation 0.1 4320 < th dose dependent rect. 24 10
679 145.13 precipitation 0.1 4320 < th dose dependent rect. 24 20
696 145.16 precipitation 0.1 4320 > th dose independent rect. 24 20
698 145.17 wind 3.0 14400 > th dose independent rect. 24 1
701 145.18 precipitation 0.1 14400 > th dose independent rect. 14 2
702 145.18 temperature 30.0 90 < th dose independent rect. 6 6
707 145.18 precipitation 0.1 14400 > th dose dependent rect. 14 2
719 145.20 radiation 30.0 43200 > th dose independent rect. 11 1
751 145.25 wind 1.0 1440 < th dose dependent rect. 9 10
758 145.27 temperature 30.0 270 < th dose independent rect. 7 2
766 145.28 precipitation 0.1 14400 < th dose independent rect. 14 2
770 145.28 precipitation 0.1 14400 < th dose dependent rect. 14 2
774 145.29 wind 1.0 43200 > th dose independent sin 8 NA
784 145.32 wind 1.0 43200 < th dose independent rect. 5 4
786 145.32 precipitation 0.1 30 < th dose independent rect. 19 17
790 145.32 precipitation 0.1 30 < th dose dependent rect. 19 17
793 145.34 radiation 30.0 43200 < th dose independent rect. 11 1
808 145.37 wind 1.0 43200 < th dose independent rect. 4 9
817 145.38 radiation 40.0 43200 > th dose dependent rect. 11 1
831 145.40 wind 1.0 1440 > th dose independent rect. 9 10
867 145.45 wind 1.0 43200 > th dose independent rect. 4 9
896 145.49 humidity 90.0 90 < th dose independent rect. 6 6
907 145.50 atmosphere 995.0 270 > th dose dependent rect. 6 3
976 145.57 precipitation 0.1 4320 > th dose dependent rect. 18 23
978 145.58 precipitation 0.1 14400 > th dose independent rect. 4 16
981 145.58 precipitation 0.1 14400 > th dose dependent rect. 19 1
990 145.60 precipitation 0.1 14400 < th dose independent rect. 4 16
993 145.60 precipitation 0.1 14400 < th dose dependent rect. 4 16