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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0744200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-expansin OsEXPA5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 1.93 (0.501) R2 : 0.205
β1 : 18.9 (4.65) R2dD : 6.43 R2D : -9.21
β2 : -- (--) R2dC : -- R2C : --
β3 : -19.5 (4.56) R2dE : 11 R2E : -13.9
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 198 (42.9) R2dD*E : 19.5 R2D*E : -14.6
γ1 : -0.633 (0.187) R2dN8 : 0.0274 R2N8 : -1.56
σ : 1.62
deviance : 1207.71
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.2
memory length : 1380
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1200.55 1.63 1.91 19 0.198 -19.5 -1.21 198 -0.616 14.3 30.14 1423 18.1 2.89
1318.35 1.7 4.23 -2.35 0.521 1.57 2.55 -- -0.804 5.14 30.14 1423 18.1 2.89
1204.88 1.62 1.92 18.9 0.22 -19.5 -- 198 -0.623 12.3 30.17 1390 18.1 7.98
1247.72 1.65 4.22 -2.52 0.376 1.57 -- -- -0.629 9.07 29.24 1044 18.1 8.62
1207.71 1.62 1.93 18.9 -- -19.5 -- 198 -0.633 -- 30.2 1380 18 11.6
1323.21 1.71 4.23 -2.33 0.475 -- 2.48 -- -0.813 5.03 -- -- -- --
1336.54 1.71 4.23 -2.33 0.537 -- -- -- -0.824 6.45 -- -- -- --
1254.41 1.65 4.2 -2.58 -- 1.6 -- -- -0.616 -- 29.2 1047 18 10.5
1410.24 1.75 4.14 -- 0.411 1.47 -- -- -0.379 9.01 29.5 692 18.1 8.97
1351.55 1.72 4.25 -2.32 -- -- -- -- -0.813 -- -- -- -- --
1479.97 1.8 4.18 -- 0.508 -- -- -- -0.564 6.71 -- -- -- --
1419.95 1.76 4.15 -- -- 1.47 -- -- -0.373 -- 29.5 693 18.1 9.03
1493.43 1.8 4.19 -- -- -- -- -- -0.555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1211.78 humidity 50.0 1440 < th dose independent rect. 16 1
2 1212.63 temperature 30.0 1440 > th dose dependent rect. 18 1
16 1212.86 humidity 50.0 1440 < th dose dependent rect. 16 1
31 1215.57 temperature 25.0 720 > th dose dependent rect. 22 1
60 1225.31 humidity 70.0 720 > th dose independent rect. 18 8
61 1225.75 radiation 1.0 720 > th dose dependent rect. 18 1
74 1226.79 humidity 50.0 1440 > th dose independent rect. 16 1
77 1228.04 radiation 30.0 1440 > th dose independent rect. 16 16
81 1229.83 wind 1.0 90 < th dose independent rect. 4 1
82 1229.88 wind 1.0 10 < th dose independent rect. 4 10
96 1231.43 wind 1.0 90 < th dose dependent rect. 4 1
114 1235.94 humidity 70.0 720 < th dose independent rect. 18 14
119 1236.74 temperature 30.0 720 < th dose independent rect. 18 8
123 1237.21 humidity 70.0 720 < th dose dependent rect. 18 2
134 1237.31 wind 1.0 10 < th dose independent rect. 4 4
138 1237.63 humidity 70.0 720 < th dose independent rect. 18 2
180 1240.04 humidity 70.0 720 > th dose independent rect. 18 14
184 1240.52 temperature 25.0 720 > th dose dependent sin 12 NA
185 1240.88 wind 1.0 10 < th dose independent rect. 4 2
188 1240.97 temperature 20.0 90 > th dose dependent rect. 3 2
205 1241.41 radiation 30.0 1440 < th dose independent rect. 16 16
237 1242.86 wind 1.0 10 < th dose independent rect. 4 8
266 1243.28 humidity 90.0 90 > th dose dependent rect. 4 1
276 1244.00 temperature 25.0 720 > th dose independent rect. 17 7
277 1244.01 atmosphere 1000.0 90 > th dose independent rect. 4 1
282 1244.15 radiation 1.0 720 < th dose dependent rect. 18 8
284 1244.28 wind 1.0 10 > th dose independent sin 2 NA
285 1244.34 radiation 30.0 1440 < th dose independent rect. 6 2
289 1244.78 radiation 30.0 1440 > th dose independent rect. 7 1
311 1245.51 wind 3.0 10 < th dose dependent rect. 4 2
312 1245.60 humidity 70.0 1440 > th dose independent rect. 18 11
314 1245.63 wind 5.0 90 < th dose dependent rect. 4 1
317 1245.70 temperature 30.0 720 > th dose independent rect. 18 1
331 1245.75 temperature 25.0 90 < th dose independent rect. 4 1
345 1245.87 humidity 90.0 90 > th dose independent rect. 4 1
346 1245.88 humidity 70.0 1440 > th dose independent rect. 18 2
351 1245.98 humidity 70.0 1440 > th dose independent rect. 18 4
360 1246.30 humidity 50.0 1440 < th dose independent rect. 16 18
366 1246.38 humidity 50.0 1440 > th dose independent rect. 16 4
382 1246.40 radiation 30.0 1440 < th dose independent rect. 21 11
383 1246.45 radiation 30.0 1440 < th dose independent rect. 23 9
396 1246.47 humidity 50.0 1440 > th dose independent rect. 16 8
412 1246.83 humidity 50.0 1440 > th dose independent rect. 16 10
419 1246.99 humidity 50.0 1440 > th dose independent rect. 16 13
422 1247.02 humidity 50.0 1440 > th dose independent rect. 16 17
432 1247.18 wind 3.0 10 < th dose dependent rect. 4 11
451 1247.37 humidity 50.0 1440 < th dose dependent rect. 16 18
515 1247.79 radiation 30.0 1440 < th dose independent rect. 19 13
538 1248.33 radiation 1.0 720 > th dose independent rect. 18 1
559 1248.95 temperature 20.0 90 > th dose independent rect. 4 1
605 1249.52 radiation 30.0 1440 < th dose independent rect. 2 6
653 1250.12 temperature 30.0 1440 < th dose independent rect. 18 11
654 1250.12 radiation 1.0 90 < th dose dependent rect. 4 1
655 1250.13 radiation 1.0 90 < th dose independent rect. 4 1
661 1250.24 temperature 30.0 1440 < th dose independent rect. 18 14
672 1250.41 precipitation 0.1 90 < th dose independent rect. 4 1
674 1250.41 precipitation 0.1 90 < th dose dependent rect. 4 1
680 1250.49 temperature 10.0 90 > th dose independent rect. 4 1
683 1250.49 humidity 50.0 90 > th dose independent rect. 4 1
687 1250.49 atmosphere 1010.0 90 < th dose independent rect. 4 1
692 1250.49 temperature 10.0 90 > th dose independent rect. 5 23
708 1250.54 temperature 30.0 1440 < th dose independent rect. 18 2
711 1250.62 wind 1.0 10 < th dose independent sin 2 NA
728 1251.24 wind 9.0 90 < th dose independent rect. 5 23
745 1251.42 atmosphere 995.0 4320 > th dose independent rect. 5 1
847 1252.68 radiation 30.0 14400 > th dose independent rect. 16 1
864 1252.74 radiation 30.0 1440 < th dose independent rect. 4 4
870 1252.87 atmosphere 995.0 90 > th dose dependent rect. 4 1
896 1253.15 radiation 20.0 1440 > th dose dependent rect. 16 16
943 1253.68 atmosphere 1010.0 30 < th dose dependent rect. 4 1
974 1254.05 radiation 1.0 30 < th dose dependent rect. 4 12