Os02g0742200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Small GTP-binding protein OsRac3.
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Os02g0742200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Small GTP-binding protein OsRac3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.61 | 0.233 | 10.9 | 0.968 | 0.263 | -0.159 | 0.322 | -1.64 | 0.108 | 4.99 | 1004 | 8 | -- | -- |
| 25.03 | 0.235 | 10.9 | 1.03 | 0.262 | -0.45 | 0.348 | -- | 0.101 | 5.07 | 1003 | 9 | -- | -- |
| 24.85 | 0.234 | 10.9 | 0.966 | 0.265 | -0.156 | -- | -1.68 | 0.107 | 4.76 | 1004 | 8 | -- | -- |
| 25.33 | 0.236 | 10.9 | 1.03 | 0.263 | -0.453 | -- | -- | 0.0994 | 4.86 | 1003 | 2 | -- | -- |
| 28.56 | 0.25 | 10.9 | 0.984 | -- | -0.197 | -- | -1.54 | 0.111 | -- | 1005 | 5 | -- | -- |
| 27.69 | 0.247 | 10.8 | 0.988 | 0.27 | -- | 0.357 | -- | 0.126 | 5 | -- | -- | -- | -- |
| 28 | 0.248 | 10.8 | 0.987 | 0.272 | -- | -- | -- | 0.124 | 4.78 | -- | -- | -- | -- |
| 28.98 | 0.252 | 10.9 | 1.04 | -- | -0.473 | -- | -- | 0.105 | -- | 1003 | 2 | -- | -- |
| 52.67 | 0.34 | 10.9 | -- | 0.277 | -0.242 | -- | -- | -0.0348 | 4.61 | 1010 | 2 | -- | -- |
| 31.92 | 0.264 | 10.8 | 0.997 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 53.66 | 0.343 | 10.9 | -- | 0.29 | -- | -- | -- | 0.0144 | 4.68 | -- | -- | -- | -- |
| 56.73 | 0.351 | 10.9 | -- | -- | -0.288 | -- | -- | -0.0366 | -- | 1010 | 2 | -- | -- |
| 58.14 | 0.356 | 10.9 | -- | -- | -- | -- | -- | 0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.29 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 7 | 22.51 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 32 | 22.75 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 45 | 22.86 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 48 | 22.88 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 50 | 22.88 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 18 |
| 58 | 22.98 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 68 | 23.04 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 80 | 23.08 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 82 | 23.08 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 93 | 23.12 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 94 | 23.12 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 97 | 23.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 103 | 23.14 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 117 | 23.17 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 120 | 23.17 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 124 | 23.17 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 125 | 23.17 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 130 | 23.18 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 144 | 23.20 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 161 | 23.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 165 | 23.22 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 15 |
| 174 | 23.23 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 238 | 23.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 239 | 23.30 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 292 | 23.38 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 335 | 23.48 | wind | 9 | 14400 | > th | dose independent | sin | 2 | NA |
| 355 | 23.53 | wind | 9 | 14400 | < th | dose independent | sin | 3 | NA |
| 389 | 23.57 | wind | 9 | 14400 | > th | dose dependent | sin | 2 | NA |
| 391 | 23.58 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 399 | 23.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 400 | 23.59 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 426 | 23.60 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 464 | 23.66 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 482 | 23.69 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 487 | 23.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 495 | 23.71 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 503 | 23.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 507 | 23.73 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 522 | 23.75 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 528 | 23.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 531 | 23.76 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 533 | 23.76 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 548 | 23.77 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 557 | 23.78 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 558 | 23.78 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 560 | 23.78 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 561 | 23.78 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 567 | 23.79 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 14 |
| 591 | 23.80 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 23 |
| 601 | 23.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 19 |
| 603 | 23.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 21 |
| 623 | 23.83 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 627 | 23.83 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 631 | 23.84 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 646 | 23.85 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 660 | 23.87 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 681 | 23.89 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 701 | 23.90 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 732 | 23.92 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 743 | 23.92 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 754 | 23.94 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 775 | 23.95 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 815 | 23.99 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 847 | 24.03 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 22 | 17 |
| 886 | 24.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 909 | 24.10 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 14 |
| 944 | 24.12 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 23 | 23 |
| 987 | 24.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 992 | 24.16 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 23 |
| 993 | 24.16 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 13 | 23 |