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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0741200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 65 precursor (EC 1.11.1.7) (Atperox P65) (ATP43).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0371) R2 : 0.0891
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.02 (0.154) R2dE : 0.0919 R2E : 0.0878
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0551 (0.0794) R2dN8 : 0.00129 R2N8 : -0.00274
σ : 0.695
deviance : 222.65
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.2
memory length : 6830
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.21 0.694 2.85 -0.195 0.172 0.912 0.237 1.25 0.0276 16.1 998.1 6782 -- --
219.5 0.69 2.85 -0.225 0.167 1.05 0.247 -- 0.0387 16 998.1 6830 -- --
218.18 0.688 2.85 -0.204 0.171 0.981 -- 1.49 0.0164 16.3 998 6803 -- --
219.64 0.69 2.85 -0.227 0.173 1.05 -- -- 0.0367 16.6 998.1 6830 -- --
219.83 0.691 2.84 -0.191 -- 1 -- 1.48 0.0229 -- 998 6805 -- --
242.1 0.729 2.88 -0.11 0.174 -- 0.208 -- -0.0573 15.9 -- -- -- --
242.21 0.729 2.88 -0.108 0.177 -- -- -- -0.0561 16.3 -- -- -- --
221.24 0.693 2.85 -0.233 -- 1.06 -- -- 0.0328 -- 998.1 6830 -- --
220.98 0.692 2.85 -- 0.171 1.02 -- -- 0.0512 16.5 998.1 6830 -- --
243.9 0.73 2.87 -0.115 -- -- -- -- -0.0608 -- -- -- -- --
242.51 0.728 2.87 -- 0.179 -- -- -- -0.0441 16.3 -- -- -- --
222.65 0.695 2.85 -- -- 1.02 -- -- 0.0551 -- 998.2 6830 -- --
244.25 0.729 2.87 -- -- -- -- -- -0.0481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.62 atmosphere 995 4320 > th dose independent rect. 23 14
3 211.99 atmosphere 995 4320 > th dose independent rect. 19 18
17 214.86 wind 9 4320 > th dose independent rect. 18 3
18 215.06 wind 9 4320 < th dose independent rect. 18 3
20 215.30 wind 7 4320 > th dose dependent rect. 18 3
28 215.68 wind 9 4320 < th dose independent rect. 18 9
38 215.86 wind 9 4320 > th dose independent rect. 20 1
40 215.90 wind 9 4320 > th dose dependent rect. 20 1
43 215.99 atmosphere 995 4320 < th dose dependent rect. 1 14
99 217.13 atmosphere 995 4320 > th dose independent rect. 7 6
153 218.62 atmosphere 995 4320 > th dose independent rect. 11 2
160 218.79 atmosphere 995 14400 < th dose dependent rect. 5 12
170 218.98 atmosphere 995 14400 > th dose independent rect. 5 12
171 218.98 atmosphere 995 14400 < th dose independent rect. 5 12
174 219.02 atmosphere 995 14400 < th dose dependent sin 22 NA
175 219.02 atmosphere 995 14400 < th dose dependent rect. 14 1
208 219.13 atmosphere 995 14400 < th dose dependent rect. 14 9
246 219.21 atmosphere 995 14400 < th dose independent sin 1 NA
250 219.23 atmosphere 995 14400 > th dose independent sin 1 NA
264 219.28 atmosphere 995 14400 > th dose independent rect. 19 23
308 219.43 atmosphere 995 14400 < th dose independent rect. 14 10
338 219.45 atmosphere 995 14400 > th dose independent rect. 8 16
350 219.46 atmosphere 995 14400 < th dose independent sin 19 NA
375 219.47 atmosphere 995 14400 > th dose independent rect. 12 12
452 219.51 atmosphere 995 14400 > th dose independent sin 19 NA
471 219.52 atmosphere 995 14400 > th dose independent rect. 14 10
579 219.59 atmosphere 995 14400 < th dose independent no NA NA
613 219.59 atmosphere 995 14400 > th dose independent rect. 14 23
626 219.60 atmosphere 995 14400 > th dose independent no NA NA
631 219.60 atmosphere 995 14400 > th dose independent rect. 11 22
657 219.64 atmosphere 995 14400 > th dose independent rect. 14 19
680 219.71 atmosphere 995 14400 < th dose independent rect. 14 1
848 220.36 atmosphere 995 14400 > th dose independent rect. 16 1
927 220.42 atmosphere 995 14400 < th dose independent rect. 16 1