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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0740800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0491) R2 : 0.553
β1 : 1.32 (0.18) R2dD : 0.056 R2D : 0.0521
β2 : 3.17 (0.151) R2dC : 0.698 R2C : 0.385
β3 : -0.942 (0.132) R2dE : 0.0807 R2E : -0.213
β4 : 3.16 (0.654) R2dD*C : 0.0444 R2D*C : -0.0159
β5 : -2.64 (0.563) R2dD*E : 0.0416 R2D*E : -0.0315
γ1 : -0.108 (0.104) R2dN8 : 0.00142 R2N8 : 0.000983
σ : 0.921
deviance : 384.28
__
_____
C
peak time of C : 9.69
E
wheather : radiation
threshold : 16.78
memory length : 45
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.28 0.921 4.37 1.32 3.17 -0.942 3.16 -2.64 -0.108 9.69 16.78 45 -- --
403.46 0.936 4.34 1.43 3.12 -0.953 1.12 -- -0.00349 9.82 15.5 46 -- --
403.8 0.936 4.38 1.35 3.2 -0.993 -- -0.768 -0.134 9.73 16.04 40 -- --
405.89 0.938 4.36 1.36 3.19 -0.932 -- -- -0.0927 9.7 15.38 39 -- --
763.35 1.29 4.44 1.25 -- 0.738 -- -0.449 -0.0821 -- 16.04 40 -- --
429.45 0.972 4.38 1.21 2.58 -- 1.35 -- -0.148 8.85 -- -- -- --
435.41 0.977 4.38 1.26 2.57 -- -- -- -0.146 8.93 -- -- -- --
565.41 1.11 4.47 1.18 -- 1.5 -- -- -0.228 -- 0.03896 12 -- --
452.97 0.991 4.39 -- 3.15 -0.893 -- -- -0.202 9.67 16.18 40 -- --
812.97 1.33 4.45 1.26 -- -- -- -- -0.129 -- -- -- -- --
477.16 1.02 4.41 -- 2.57 -- -- -- -0.286 8.89 -- -- -- --
602.04 1.15 4.5 -- -- 1.51 -- -- -0.36 -- 0.03896 12 -- --
854.68 1.36 4.48 -- -- -- -- -- -0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.76 radiation 10.0 270 < th dose independent rect. 1 10
3 372.54 radiation 20.0 270 < th dose dependent rect. 1 10
43 379.04 wind 5.0 270 < th dose independent rect. 3 3
44 379.10 radiation 40.0 270 < th dose independent rect. 10 21
52 379.57 wind 7.0 90 < th dose independent rect. 7 9
53 379.60 temperature 20.0 90 > th dose independent rect. 7 21
58 379.78 radiation 20.0 270 < th dose dependent sin 6 NA
60 379.88 radiation 1.0 270 > th dose dependent sin 8 NA
61 379.99 radiation 10.0 270 < th dose independent sin 6 NA
63 380.10 wind 7.0 90 < th dose independent rect. 19 9
72 380.60 precipitation 0.1 270 < th dose independent rect. 6 9
73 380.60 precipitation 0.1 270 < th dose dependent rect. 6 9
77 380.66 wind 5.0 270 < th dose independent rect. 1 6
79 380.77 radiation 10.0 10 < th dose independent rect. 17 15
84 381.00 wind 7.0 90 < th dose independent rect. 7 21
95 381.34 radiation 1.0 90 > th dose dependent rect. 7 9
98 381.46 temperature 15.0 270 > th dose independent rect. 6 9
101 381.51 humidity 60.0 30 > th dose dependent sin 3 NA
103 381.54 precipitation 0.1 90 < th dose independent rect. 7 21
104 381.54 precipitation 0.1 90 < th dose dependent rect. 7 21
108 381.64 temperature 15.0 270 > th dose independent rect. 15 15
114 381.74 atmosphere 1015.0 270 < th dose independent rect. 6 9
116 381.80 radiation 40.0 270 < th dose independent rect. 15 15
119 381.85 radiation 20.0 30 < th dose independent sin 5 NA
121 381.88 wind 1.0 270 > th dose independent rect. 3 2
124 381.91 radiation 40.0 90 < th dose dependent sin 4 NA
125 381.91 radiation 10.0 270 < th dose dependent rect. 3 3
127 381.93 radiation 1.0 270 > th dose independent rect. 6 9
130 381.99 radiation 10.0 90 < th dose independent rect. 4 4
138 382.18 precipitation 0.1 90 < th dose independent rect. 19 9
139 382.18 precipitation 0.1 90 < th dose dependent rect. 19 9
141 382.19 wind 1.0 90 > th dose independent rect. 7 9
143 382.20 radiation 20.0 30 < th dose independent rect. 10 23
144 382.24 wind 9.0 270 < th dose independent rect. 15 15
155 382.46 atmosphere 995.0 270 > th dose independent rect. 6 9
158 382.49 humidity 70.0 90 > th dose independent sin 5 NA
159 382.51 radiation 1.0 90 > th dose dependent sin 3 NA
162 382.53 precipitation 0.1 90 < th dose independent rect. 4 3
163 382.53 precipitation 0.1 90 < th dose dependent rect. 4 3
170 382.61 temperature 10.0 90 > th dose independent rect. 4 3
172 382.61 temperature 30.0 90 < th dose independent rect. 4 3
173 382.61 humidity 50.0 90 > th dose independent rect. 4 3
175 382.61 atmosphere 995.0 90 > th dose independent rect. 4 3
176 382.61 atmosphere 1015.0 90 < th dose independent rect. 4 3
177 382.61 radiation 40.0 90 < th dose independent rect. 4 3
178 382.61 temperature 10.0 90 > th dose independent rect. 7 21
180 382.62 radiation 10.0 270 > th dose independent sin 7 NA
183 382.62 radiation 40.0 270 < th dose independent rect. 11 19
186 382.64 humidity 70.0 90 > th dose independent rect. 1 13
189 382.72 humidity 90.0 10 < th dose dependent rect. 7 10
194 382.75 radiation 40.0 90 < th dose dependent rect. 11 22
213 382.91 temperature 10.0 90 > th dose dependent rect. 7 9
226 383.05 radiation 1.0 90 > th dose dependent rect. 4 12
236 383.06 radiation 10.0 270 < th dose independent rect. 2 4
245 383.13 humidity 60.0 270 > th dose dependent rect. 1 12
246 383.14 humidity 70.0 90 > th dose independent rect. 3 11
250 383.17 temperature 10.0 270 > th dose independent rect. 2 4
252 383.17 temperature 30.0 270 < th dose independent rect. 2 4
253 383.17 humidity 50.0 270 > th dose independent rect. 2 4
256 383.17 atmosphere 995.0 270 > th dose independent rect. 2 4
257 383.17 atmosphere 1015.0 270 < th dose independent rect. 2 4
296 383.35 temperature 15.0 90 > th dose independent rect. 4 15
298 383.39 radiation 10.0 90 < th dose independent rect. 4 9
311 383.51 temperature 10.0 90 > th dose independent rect. 19 9
312 383.51 temperature 30.0 90 < th dose independent rect. 19 9
313 383.51 humidity 50.0 90 > th dose independent rect. 19 9
315 383.51 atmosphere 995.0 90 > th dose independent rect. 19 9
316 383.51 radiation 1.0 90 < th dose independent rect. 19 9
322 383.51 atmosphere 1015.0 90 < th dose independent rect. 4 15
324 383.51 radiation 1.0 90 < th dose dependent rect. 19 9
341 383.71 radiation 20.0 30 < th dose independent rect. 3 23
347 383.77 radiation 10.0 90 < th dose independent rect. 4 7
351 383.82 wind 9.0 90 < th dose independent rect. 4 15
367 383.98 radiation 20.0 30 < th dose independent rect. 17 21
374 384.04 radiation 1.0 90 > th dose dependent rect. 7 22
378 384.06 wind 1.0 10 > th dose independent rect. 7 10
399 384.13 wind 9.0 90 < th dose dependent rect. 4 3
412 384.29 humidity 60.0 90 > th dose dependent rect. 3 11
418 384.33 wind 1.0 270 > th dose independent rect. 1 5
429 384.43 precipitation 0.1 270 < th dose independent rect. 2 4
442 384.43 precipitation 0.1 270 < th dose dependent rect. 2 4
451 384.50 radiation 40.0 270 < th dose independent rect. 13 17
524 384.74 radiation 40.0 90 < th dose dependent rect. 23 23
544 384.84 temperature 10.0 90 > th dose dependent rect. 7 21
575 385.07 radiation 1.0 270 > th dose dependent rect. 4 9
597 385.13 precipitation 0.1 90 < th dose independent rect. 4 15
600 385.13 precipitation 0.1 90 < th dose dependent rect. 4 15
607 385.18 radiation 40.0 1440 < th dose independent rect. 17 15
617 385.25 wind 9.0 90 < th dose dependent rect. 19 9
620 385.30 atmosphere 995.0 90 > th dose independent rect. 4 15
636 385.41 wind 1.0 270 > th dose independent rect. 7 18
659 385.50 radiation 40.0 90 < th dose dependent rect. 16 15
664 385.52 radiation 1.0 270 > th dose independent sin 3 NA
669 385.55 atmosphere 995.0 90 > th dose independent rect. 16 15
677 385.60 humidity 80.0 270 < th dose independent rect. 7 6
680 385.62 temperature 10.0 90 > th dose dependent rect. 22 6
696 385.73 radiation 20.0 90 < th dose independent rect. 13 18
734 385.88 radiation 1.0 270 > th dose independent rect. 18 21
736 385.91 radiation 20.0 30 > th dose independent sin 2 NA
737 385.91 radiation 1.0 90 > th dose dependent no NA NA
804 385.93 wind 9.0 90 < th dose dependent rect. 4 15
808 385.98 temperature 10.0 90 > th dose dependent rect. 4 3
809 385.99 radiation 20.0 30 < th dose independent rect. 1 13
815 386.04 humidity 50.0 90 > th dose dependent rect. 4 3
817 386.06 wind 1.0 10 > th dose independent rect. 4 3
825 386.08 radiation 1.0 270 < th dose dependent rect. 14 12
837 386.19 humidity 70.0 270 > th dose independent rect. 1 10
840 386.21 radiation 20.0 30 < th dose independent rect. 1 23
844 386.24 radiation 20.0 90 < th dose independent rect. 23 23
863 386.32 radiation 1.0 90 < th dose dependent rect. 17 11
867 386.34 radiation 20.0 30 < th dose independent rect. 5 17
869 386.35 radiation 40.0 30 < th dose dependent rect. 3 23
870 386.36 humidity 90.0 30 < th dose independent rect. 7 10
874 386.36 radiation 40.0 90 < th dose dependent rect. 13 18
875 386.38 radiation 1.0 270 < th dose independent sin 3 NA
904 386.46 radiation 20.0 30 < th dose independent rect. 1 11
906 386.46 radiation 40.0 10 < th dose dependent rect. 17 15
909 386.47 radiation 1.0 270 < th dose dependent rect. 8 18
914 386.58 radiation 40.0 1440 < th dose independent rect. 5 3
956 386.91 radiation 10.0 10 < th dose independent rect. 5 3
996 387.04 wind 1.0 10 > th dose independent rect. 9 16