FiT-DB / Search/ Help/ Sample detail

Os02g0740500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.88 (0.0358) R2 : 0.574
β1 : -2.52 (0.201) R2dD : 0.504 R2D : -0.387
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.06 (0.14) R2dE : 0.631 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.2 (0.884) R2dD*E : 0.423 R2D*E : -0.341
γ1 : 0.0944 (0.0761) R2dN8 : 0.00269 R2N8 : 0.0117
σ : 0.564
deviance : 146.56
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.6
memory length : 1646
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 2.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.41 0.543 9.89 -2.47 0.42 3.07 0.94 -10.4 0.104 0.162 22.58 1625 15 2.42
170.11 0.607 9.66 -0.635 0.372 2.69 0.672 -- 0.552 1.61 18.77 1641 15.1 2.42
136.8 0.545 9.89 -2.51 0.414 3.08 -- -10.3 0.0981 0.217 22.6 1627 15 2.67
171.67 0.61 9.67 -0.656 0.394 2.84 -- -- 0.54 0.945 18.29 1603 15.1 2.76
146.56 0.564 9.88 -2.52 -- 3.06 -- -10.2 0.0944 -- 22.6 1646 15 2.88
278.62 0.783 9.64 -0.0705 0.58 -- 0.651 -- 0.727 21.8 -- -- -- --
280.15 0.784 9.64 -0.0937 0.582 -- -- -- 0.726 21.5 -- -- -- --
179.75 0.624 9.67 -0.676 -- 2.65 -- -- 0.499 -- 18.16 1593 15.2 3.53
182.69 0.63 9.66 -- 0.369 2.5 -- -- 0.599 0.306 18.07 1604 15 3.28
300.09 0.809 9.62 -0.0896 -- -- -- -- 0.725 -- -- -- -- --
280.38 0.783 9.64 -- 0.582 -- -- -- 0.737 21.5 -- -- -- --
191.09 0.644 9.66 -- -- 2.51 -- -- 0.582 -- 17.6 1605 15.1 3.62
300.3 0.809 9.62 -- -- -- -- -- 0.735 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.16 temperature 20 1440 > th dose dependent rect. 14 4
56 159.26 temperature 20 1440 > th dose dependent sin 19 NA
78 160.15 wind 5 43200 > th dose dependent rect. 15 1
267 163.44 temperature 20 1440 > th dose dependent rect. 4 15
330 164.18 wind 5 43200 > th dose independent rect. 11 5
371 164.69 wind 5 43200 > th dose dependent rect. 13 12
372 164.71 wind 5 43200 > th dose dependent rect. 13 8
373 164.72 temperature 25 1440 < th dose independent rect. 11 13
380 164.81 wind 5 43200 > th dose independent rect. 10 7
394 164.91 wind 5 43200 < th dose independent rect. 11 5
415 165.14 temperature 25 1440 > th dose independent rect. 10 14
451 165.46 wind 5 43200 > th dose independent rect. 11 12
463 165.59 wind 7 43200 < th dose independent rect. 15 1
480 165.73 wind 3 43200 > th dose dependent rect. 11 5
481 165.74 wind 5 43200 > th dose independent rect. 13 10
524 166.06 temperature 25 1440 < th dose independent rect. 13 11
548 166.20 wind 5 43200 < th dose independent rect. 11 12
657 166.67 temperature 25 1440 > th dose dependent rect. 21 22
663 166.70 wind 7 43200 > th dose independent rect. 15 1
730 166.95 temperature 25 1440 > th dose dependent no NA NA
742 167.02 wind 5 43200 > th dose independent sin 19 NA
762 167.12 wind 5 43200 > th dose dependent sin 19 NA
802 167.36 wind 5 43200 > th dose dependent rect. 10 11
849 167.69 temperature 25 1440 < th dose independent rect. 6 18
862 167.79 wind 5 43200 < th dose independent sin 19 NA
878 167.90 temperature 25 1440 < th dose independent sin 19 NA
910 168.12 temperature 25 1440 > th dose independent sin 19 NA
950 168.36 temperature 25 1440 > th dose independent rect. 6 18
964 168.46 wind 7 43200 < th dose independent rect. 14 7
999 168.66 wind 7 43200 < th dose independent rect. 13 18