Os02g0739900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0739900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 508.39 | 1.06 | 7.7 | -6.4 | 0.914 | 2.85 | -1.92 | 0.141 | -2.23 | 16.4 | 26.2 | 3543 | -- | -- |
| 508.37 | 1.05 | 7.7 | -6.45 | 0.914 | 2.87 | -1.93 | -- | -2.23 | 16.4 | 26.2 | 3549 | -- | -- |
| 518.34 | 1.06 | 7.7 | -6.39 | 0.904 | 2.85 | -- | 0.258 | -2.22 | 16.5 | 26.2 | 3549 | -- | -- |
| 518.35 | 1.06 | 7.71 | -6.46 | 0.907 | 2.87 | -- | -- | -2.25 | 16.6 | 26.19 | 3549 | -- | -- |
| 560.34 | 1.1 | 7.7 | -6.4 | -- | 2.77 | -- | 0.253 | -2.26 | -- | 26.1 | 3459 | -- | -- |
| 750 | 1.28 | 7.58 | -5.41 | 0.904 | -- | -1.91 | -- | -1.67 | 17.5 | -- | -- | -- | -- |
| 757.86 | 1.29 | 7.59 | -5.4 | 0.907 | -- | -- | -- | -1.68 | 18.1 | -- | -- | -- | -- |
| 533.16 | 1.08 | 7.76 | -6.41 | -- | 2.71 | -- | -- | -2.47 | -- | 25.9 | 2008 | -- | -- |
| 1471.97 | 1.79 | 7.47 | -- | 0.812 | 1.43 | -- | -- | -1.23 | 15.9 | 28.96 | 2253 | -- | -- |
| 800.47 | 1.32 | 7.58 | -5.43 | -- | -- | -- | -- | -1.7 | -- | -- | -- | -- | -- |
| 1527.38 | 1.83 | 7.46 | -- | 0.988 | -- | -- | -- | -1.08 | 17.8 | -- | -- | -- | -- |
| 1506.32 | 1.81 | 7.47 | -- | -- | 1.45 | -- | -- | -1.21 | -- | 28.99 | 2152 | -- | -- |
| 1577.99 | 1.85 | 7.44 | -- | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 483.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 483.73 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 6 | 484.04 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 17 | 485.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 21 | 485.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 22 | 485.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 31 | 487.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 33 | 487.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 87 | 492.67 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 101 | 493.49 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 104 | 493.81 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 106 | 494.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 124 | 494.72 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 136 | 495.11 | temperature | 25.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 160 | 496.11 | temperature | 25.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 210 | 497.83 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 266 | 499.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 284 | 500.14 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 294 | 500.33 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 315 | 500.68 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 318 | 500.70 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 327 | 500.87 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 332 | 500.94 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 342 | 501.30 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 363 | 501.77 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 447 | 503.22 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 492 | 503.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 558 | 504.95 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 570 | 505.08 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 579 | 505.20 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 647 | 505.74 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 662 | 505.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 685 | 505.93 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 887 | 507.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 902 | 507.59 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 917 | 507.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 939 | 507.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 958 | 507.92 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |