Os02g0739400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 231 precursor.
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Os02g0739400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 231 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.99 | 0.618 | 10.5 | -0.874 | 1.72 | -2.28 | 0.644 | -2.26 | -0.445 | 11.2 | 9.581 | 264 | 5.17 | 8.85 |
| 175.43 | 0.617 | 10.5 | -0.729 | 1.73 | -2.37 | -0.501 | -- | -0.414 | 11.1 | 11.45 | 261 | 5.33 | 8.65 |
| 173.01 | 0.613 | 10.5 | -0.815 | 1.68 | -2.26 | -- | -1.41 | -0.43 | 11.1 | 10.92 | 263 | 5.33 | 8.58 |
| 176.91 | 0.619 | 10.5 | -0.802 | 1.64 | -2.25 | -- | -- | -0.431 | 11.1 | 11.13 | 264 | 5.33 | 8.58 |
| 202.64 | 0.663 | 10.6 | -0.987 | -- | -1.02 | -- | -1.88 | -0.499 | -- | 21.62 | 220 | 6.9 | 7.1 |
| 218.68 | 0.693 | 10.6 | -0.95 | 0.451 | -- | 0.71 | -- | -0.51 | 4.76 | -- | -- | -- | -- |
| 219.29 | 0.693 | 10.6 | -0.952 | 0.475 | -- | -- | -- | -0.513 | 5.63 | -- | -- | -- | -- |
| 203.61 | 0.665 | 10.6 | -0.838 | -- | -1.08 | -- | -- | -0.47 | -- | 21.66 | 162 | 8.27 | 6.35 |
| 192.74 | 0.647 | 10.5 | -- | 1.61 | -2.29 | -- | -- | -0.319 | 11.1 | 13.95 | 274 | 5.28 | 8.42 |
| 231.01 | 0.71 | 10.6 | -0.936 | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
| 243.16 | 0.729 | 10.6 | -- | 0.46 | -- | -- | -- | -0.407 | 5.72 | -- | -- | -- | -- |
| 220.45 | 0.692 | 10.6 | -- | -- | -1.31 | -- | -- | -0.38 | -- | 22.54 | 179 | 9.02 | 5.15 |
| 254.14 | 0.744 | 10.6 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 7 | 176.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 14 | 178.09 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 3 |
| 19 | 178.60 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 24 | 179.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 33 | 179.68 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 60 | 181.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 62 | 181.65 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 72 | 182.13 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 135 | 184.26 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 136 | 184.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 216 | 186.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 217 | 186.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 238 | 186.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 251 | 186.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 255 | 186.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 290 | 187.22 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 314 | 187.52 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 323 | 187.72 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 341 | 187.87 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 343 | 187.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 387 | 188.35 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 397 | 188.44 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 412 | 188.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 419 | 188.61 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 447 | 188.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 449 | 188.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 452 | 188.86 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 486 | 189.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 488 | 189.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 533 | 189.33 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 547 | 189.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 571 | 189.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 578 | 189.76 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 600 | 189.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 603 | 189.86 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 604 | 189.86 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 653 | 190.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 654 | 190.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 701 | 190.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 702 | 190.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 15 |
| 703 | 190.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 704 | 190.54 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 706 | 190.55 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 16 |
| 716 | 190.59 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 9 |
| 722 | 190.61 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 734 | 190.71 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 752 | 190.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 754 | 190.83 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 766 | 190.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 777 | 190.96 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 781 | 190.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 790 | 191.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 801 | 191.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 812 | 191.10 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 816 | 191.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 828 | 191.18 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 832 | 191.20 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 881 | 191.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 926 | 191.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 936 | 191.63 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 939 | 191.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 940 | 191.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 942 | 191.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 960 | 191.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 969 | 191.76 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 7 |
| 971 | 191.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 987 | 191.81 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 992 | 191.83 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 8 |