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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0738100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.0531) R2 : 0.565
β1 : 1.18 (0.207) R2dD : 0.0463 R2D : 0.0746
β2 : 0.715 (0.115) R2dC : 0.0375 R2C : 0.0317
β3 : 3.44 (0.323) R2dE : 0.324 R2E : -0.228
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.4 (1.02) R2dD*E : 0.306 R2D*E : -0.195
γ1 : 2.09 (0.108) R2dN8 : 0.553 R2N8 : 0.136
σ : 0.881
deviance : 357.79
__
_____
C
peak time of C : 2.44
E
wheather : wind
threshold : 0.737
memory length : 4278
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.07
open length of G : 1.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.99 0.885 5.73 1.38 0.728 3.07 1.21 -10.5 2.1 2.58 0.841 4279 6.08 1.15
458.48 0.997 5.52 1.89 0.99 2.77 1.08 -- 2.17 2.96 1.321 3667 5.7 2.17
357.79 0.881 5.75 1.18 0.715 3.44 -- -11.4 2.09 2.44 0.737 4278 6.07 1.15
436.61 0.973 5.4 1.93 0.852 1.95 -- -- 2.2 2.44 1.087 3622 5.65 2.22
388.37 0.918 5.75 1.19 -- 3.48 -- -11.6 2.1 -- 0.7161 4295 6.08 1.15
461.72 1.01 5.51 2.3 0.728 -- 1.27 -- 1.75 2.68 -- -- -- --
467.38 1.01 5.52 2.27 0.734 -- -- -- 1.75 2.77 -- -- -- --
473.74 1.01 5.4 2.16 -- 1.7 -- -- 2.22 -- 1.237 3147 5.61 2.17
496.68 1.04 5.45 -- 0.949 2.45 -- -- 2.09 2.28 1.572 3668 5.33 1.93
498.63 1.04 5.51 2.3 -- -- -- -- 1.76 -- -- -- -- --
603.28 1.15 5.57 -- 0.778 -- -- -- 1.49 2.79 -- -- -- --
525.41 1.07 5.42 -- -- 2.45 -- -- 2.13 -- 1.4 4385 5.3 1.98
638.41 1.18 5.57 -- -- -- -- -- 1.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.06 wind 1 4320 < th dose dependent rect. 6 1
2 381.15 wind 9 43200 > th dose independent rect. 16 1
3 383.97 wind 9 43200 < th dose independent rect. 16 1
4 384.41 humidity 70 43200 < th dose dependent rect. 1 8
5 384.44 humidity 70 43200 < th dose dependent rect. 6 3
13 384.96 wind 9 43200 > th dose dependent rect. 16 1
15 386.23 humidity 60 43200 > th dose independent rect. 6 3
24 387.65 humidity 60 43200 < th dose independent rect. 6 3
30 388.01 humidity 70 43200 < th dose independent rect. 24 8
35 388.37 wind 1 43200 > th dose independent rect. 20 7
40 388.61 wind 1 14400 < th dose dependent rect. 24 3
49 388.91 humidity 70 43200 < th dose independent rect. 16 2
51 388.93 wind 1 43200 < th dose independent rect. 21 6
63 389.21 wind 1 43200 < th dose independent rect. 22 4
72 389.35 wind 1 43200 > th dose independent rect. 19 10
77 389.45 wind 1 43200 > th dose independent rect. 17 12
94 389.90 humidity 70 43200 > th dose independent rect. 17 1
95 389.90 wind 9 43200 > th dose independent rect. 16 3
102 390.07 wind 9 43200 < th dose independent rect. 16 3
111 390.21 radiation 10 43200 < th dose dependent rect. 6 1
115 390.33 humidity 60 43200 > th dose dependent rect. 6 4
121 390.46 wind 1 43200 > th dose independent sin 14 NA
130 390.80 wind 1 43200 < th dose dependent sin 14 NA
138 391.20 humidity 60 43200 < th dose dependent sin 8 NA
142 391.33 wind 1 4320 < th dose dependent rect. 4 4
149 391.44 radiation 10 43200 < th dose dependent rect. 16 17
176 391.73 humidity 60 43200 > th dose dependent rect. 17 3
184 391.87 atmosphere 1010 14400 < th dose independent rect. 7 2
188 391.88 atmosphere 1005 14400 > th dose dependent rect. 23 3
192 391.92 wind 7 43200 > th dose independent rect. 18 1
195 391.95 wind 1 43200 < th dose dependent rect. 20 7
204 391.99 atmosphere 1005 14400 > th dose dependent rect. 1 1
210 392.08 wind 1 43200 < th dose independent sin 14 NA
217 392.14 radiation 1 43200 < th dose dependent rect. 19 10
218 392.14 radiation 1 43200 > th dose dependent rect. 16 15
220 392.17 wind 1 43200 < th dose dependent rect. 16 13
226 392.24 radiation 20 43200 < th dose dependent sin 13 NA
292 392.57 atmosphere 1010 14400 > th dose independent rect. 8 1
295 392.58 radiation 10 43200 < th dose independent rect. 15 1
297 392.58 radiation 1 43200 < th dose dependent rect. 22 7
323 392.68 radiation 20 43200 < th dose independent rect. 13 7
324 392.68 radiation 20 43200 < th dose independent rect. 13 16
326 392.69 radiation 20 43200 < th dose independent rect. 13 5
346 392.75 radiation 1 43200 > th dose dependent rect. 13 18
365 392.82 humidity 90 14400 > th dose dependent rect. 5 1
367 392.83 radiation 1 43200 > th dose dependent sin 14 NA
370 392.83 radiation 10 43200 < th dose dependent rect. 2 5
382 392.85 atmosphere 1005 14400 > th dose dependent rect. 3 1
410 392.93 wind 1 43200 < th dose dependent rect. 13 16
442 393.08 radiation 30 43200 < th dose independent rect. 15 1
458 393.14 humidity 80 43200 < th dose independent rect. 19 2
466 393.16 radiation 20 43200 < th dose dependent rect. 16 1
484 393.19 radiation 1 43200 > th dose dependent rect. 17 1
485 393.19 radiation 1 43200 > th dose dependent rect. 13 6
497 393.20 atmosphere 1005 14400 > th dose dependent sin 10 NA
586 393.40 radiation 20 43200 < th dose independent sin 15 NA
620 393.46 humidity 80 43200 < th dose independent rect. 18 4
634 393.49 radiation 30 43200 < th dose dependent rect. 13 6
636 393.49 radiation 30 43200 < th dose dependent rect. 13 9
637 393.49 radiation 30 43200 < th dose dependent rect. 13 14
726 393.72 wind 1 43200 < th dose independent rect. 16 13
782 393.85 humidity 90 14400 > th dose dependent rect. 1 5
795 393.88 humidity 90 43200 < th dose dependent rect. 17 1
821 393.95 radiation 40 43200 > th dose dependent rect. 13 19
877 394.02 atmosphere 1005 14400 > th dose dependent rect. 8 1
878 394.03 radiation 40 43200 > th dose dependent rect. 13 3