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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0736800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0451) R2 : 0.333
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.29 (0.111) R2dC : 0.203 R2C : 0.246
β3 : 1.69 (0.249) R2dE : 0.0743 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.097) R2dN8 : 0.00366 R2N8 : 0.0114
σ : 0.838
deviance : 323.97
__
_____
C
peak time of C : 21.9
E
wheather : radiation
threshold : 1.336
memory length : 1473
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.67 0.833 3.93 -0.562 1.4 2.37 -1.04 3.73 -0.23 22.2 0.4819 1443 -- --
318.61 0.831 3.87 -0.296 1.25 1.58 -1.13 -- -0.18 21.9 1.808 1482 -- --
317.85 0.83 3.94 -0.566 1.52 2.42 -- 4.18 -0.237 22.3 0.3896 1421 -- --
322.67 0.837 3.86 -0.265 1.27 1.56 -- -- -0.182 22 2.049 1478 -- --
358.9 0.887 3.87 -0.465 -- 0.978 -- -1.19 -0.343 -- 0.3896 1421 -- --
344.01 0.87 3.91 -0.595 1.41 -- -1.16 -- -0.368 22.1 -- -- -- --
349.33 0.875 3.91 -0.55 1.42 -- -- -- -0.365 22.1 -- -- -- --
368.09 0.897 3.87 -0.49 -- 0.97 -- -- -0.351 -- 0.3896 1421 -- --
323.97 0.838 3.85 -- 1.29 1.69 -- -- -0.163 21.9 1.336 1473 -- --
470.78 1.01 3.87 -0.53 -- -- -- -- -0.363 -- -- -- -- --
357.29 0.884 3.9 -- 1.41 -- -- -- -0.304 22.1 -- -- -- --
374.42 0.904 3.86 -- -- 0.975 -- -- -0.296 -- 0.3896 1421 -- --
478.2 1.02 3.86 -- -- -- -- -- -0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.65 humidity 60.0 14400 > th dose independent rect. 18 1
2 305.67 humidity 70.0 14400 < th dose independent rect. 19 3
12 305.91 humidity 70.0 14400 < th dose dependent rect. 18 13
14 305.93 humidity 70.0 14400 < th dose dependent rect. 18 1
15 306.06 humidity 70.0 14400 < th dose dependent rect. 18 4
27 306.95 humidity 60.0 14400 > th dose independent rect. 18 14
28 307.36 humidity 50.0 14400 < th dose independent rect. 16 1
32 307.88 humidity 50.0 14400 > th dose independent rect. 16 1
33 307.98 humidity 60.0 14400 > th dose independent rect. 18 4
34 307.98 humidity 60.0 14400 > th dose independent rect. 18 11
36 308.02 humidity 60.0 14400 > th dose independent rect. 18 8
43 308.37 humidity 60.0 14400 < th dose independent rect. 18 14
55 309.58 humidity 50.0 14400 > th dose independent rect. 16 5
56 309.58 humidity 50.0 14400 > th dose independent rect. 16 13
58 309.59 humidity 50.0 14400 < th dose dependent rect. 16 1
59 309.60 humidity 50.0 14400 > th dose independent rect. 16 15
60 309.60 humidity 60.0 14400 < th dose dependent rect. 16 4
112 309.99 humidity 50.0 14400 < th dose dependent rect. 16 18
114 310.07 humidity 50.0 14400 < th dose independent rect. 16 17
188 311.56 radiation 10.0 4320 < th dose dependent rect. 18 13
190 311.60 radiation 10.0 4320 < th dose dependent rect. 1 6
191 311.60 radiation 10.0 4320 < th dose dependent rect. 20 11
193 311.61 radiation 10.0 4320 < th dose dependent rect. 4 3
211 311.82 radiation 10.0 4320 < th dose dependent rect. 6 1
230 312.76 precipitation 0.1 43200 > th dose dependent rect. 17 2
233 313.01 radiation 40.0 4320 < th dose dependent rect. 18 13
235 313.11 radiation 1.0 4320 > th dose dependent rect. 18 13
242 313.24 radiation 10.0 14400 > th dose dependent rect. 17 1
260 313.30 radiation 40.0 4320 < th dose dependent rect. 4 3
262 313.31 radiation 40.0 4320 < th dose dependent rect. 1 6
263 313.32 wind 9.0 14400 > th dose independent rect. 15 2
267 313.34 radiation 1.0 4320 > th dose dependent rect. 4 3
287 313.42 precipitation 0.1 43200 > th dose independent rect. 17 1
299 313.48 precipitation 0.1 43200 < th dose independent rect. 17 1
300 313.48 precipitation 0.1 43200 < th dose dependent rect. 17 1
313 313.72 wind 1.0 14400 > th dose independent rect. 10 2
323 313.93 radiation 1.0 4320 < th dose independent rect. 18 12
324 314.02 radiation 1.0 4320 > th dose independent rect. 18 12
336 314.27 temperature 20.0 720 > th dose dependent rect. 18 16
338 314.29 wind 9.0 14400 < th dose independent rect. 15 2
341 314.35 wind 9.0 43200 < th dose independent rect. 19 2
348 314.47 wind 9.0 43200 > th dose independent rect. 19 2
361 314.54 wind 1.0 14400 < th dose independent rect. 10 2
365 314.61 radiation 1.0 1440 < th dose dependent rect. 8 22
416 314.93 wind 9.0 43200 > th dose dependent rect. 19 4
418 314.98 wind 9.0 43200 > th dose dependent rect. 19 2
421 314.99 wind 1.0 14400 < th dose dependent rect. 10 2
435 315.15 temperature 15.0 1440 > th dose dependent rect. 15 1
457 315.25 wind 9.0 43200 > th dose dependent rect. 17 6
463 315.34 wind 9.0 43200 > th dose dependent rect. 17 4
476 315.55 radiation 1.0 1440 < th dose dependent rect. 17 23
480 315.58 temperature 10.0 1440 > th dose dependent rect. 11 6
484 315.63 precipitation 0.1 43200 > th dose dependent rect. 11 7
489 315.67 humidity 90.0 720 < th dose dependent rect. 18 4
503 315.81 radiation 1.0 4320 > th dose independent rect. 12 18
505 315.82 radiation 1.0 4320 < th dose independent rect. 12 18
506 315.82 radiation 20.0 4320 < th dose dependent rect. 16 17
514 315.86 radiation 1.0 1440 < th dose dependent rect. 5 16
515 315.87 radiation 1.0 1440 < th dose dependent rect. 5 14
517 315.87 radiation 1.0 1440 < th dose dependent rect. 5 20
538 315.93 radiation 10.0 4320 < th dose independent rect. 15 18
560 316.01 radiation 10.0 14400 < th dose independent rect. 17 1
561 316.01 wind 9.0 43200 > th dose independent rect. 17 4
582 316.10 temperature 10.0 1440 > th dose dependent rect. 11 3
614 316.21 temperature 20.0 720 > th dose dependent sin 10 NA
617 316.22 temperature 30.0 720 < th dose dependent rect. 16 19
639 316.27 radiation 1.0 1440 < th dose dependent rect. 24 20
641 316.28 radiation 1.0 4320 < th dose independent rect. 5 1
648 316.29 radiation 1.0 4320 > th dose independent rect. 5 1
658 316.30 radiation 1.0 4320 < th dose independent rect. 9 21
675 316.31 radiation 1.0 1440 < th dose dependent no NA NA
685 316.31 radiation 1.0 1440 < th dose dependent rect. 20 23
687 316.32 radiation 1.0 4320 > th dose independent rect. 9 21
688 316.32 radiation 40.0 1440 < th dose dependent rect. 15 2
710 316.34 radiation 1.0 1440 > th dose dependent rect. 15 2
730 316.38 radiation 10.0 14400 < th dose independent rect. 16 5
732 316.38 radiation 10.0 4320 < th dose dependent sin 10 NA
734 316.39 radiation 10.0 14400 < th dose independent rect. 16 3
753 316.40 radiation 1.0 1440 < th dose dependent rect. 12 23
782 316.47 radiation 40.0 14400 > th dose dependent rect. 13 1
786 316.50 wind 9.0 14400 > th dose dependent rect. 15 2
790 316.51 radiation 10.0 4320 < th dose independent rect. 4 3
792 316.51 radiation 1.0 1440 < th dose dependent sin 0 NA
797 316.52 radiation 10.0 4320 < th dose independent rect. 2 5
801 316.52 radiation 40.0 1440 < th dose dependent rect. 15 6
810 316.54 wind 1.0 14400 > th dose independent rect. 21 2
815 316.54 radiation 10.0 4320 < th dose independent rect. 20 11
824 316.55 wind 9.0 43200 > th dose dependent rect. 17 13
863 316.62 radiation 40.0 1440 < th dose dependent rect. 15 10
897 316.68 radiation 40.0 14400 < th dose dependent rect. 18 3
901 316.69 wind 9.0 43200 < th dose independent rect. 17 4
929 316.73 radiation 1.0 1440 < th dose dependent rect. 15 23
974 316.84 atmosphere 1000.0 43200 > th dose independent rect. 12 1
982 316.85 radiation 1.0 1440 < th dose dependent rect. 8 13
983 316.85 radiation 1.0 1440 < th dose dependent rect. 8 17
987 316.86 radiation 1.0 1440 < th dose dependent rect. 8 11