Os02g0736400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dihydroorotate dehydrogenase family protein.
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Os02g0736400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dihydroorotate dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.8 | 0.256 | 11 | 0.701 | 0.706 | -0.692 | 0.769 | 1.2 | -0.109 | 22.3 | 2.68 | 224 | -- | -- |
| 34.02 | 0.272 | 11 | 0.754 | 0.65 | -0.718 | 0.114 | -- | -0.107 | 22.2 | 5.057 | 196 | -- | -- |
| 31.01 | 0.259 | 11 | 0.639 | 0.67 | -0.721 | -- | 0.757 | -0.115 | 22.1 | 2.715 | 224 | -- | -- |
| 33.14 | 0.268 | 11 | 0.658 | 0.691 | -0.685 | -- | -- | -0.11 | 22.4 | 3.81 | 208 | -- | -- |
| 42.41 | 0.303 | 10.9 | 0.663 | -- | -1.04 | -- | 0.656 | -0.0808 | -- | 2.7 | 116 | -- | -- |
| 35.67 | 0.28 | 11 | 0.616 | 1.34 | -- | -0.495 | -- | -0.146 | 0.135 | -- | -- | -- | -- |
| 36.72 | 0.284 | 11 | 0.636 | 1.35 | -- | -- | -- | -0.144 | 0.091 | -- | -- | -- | -- |
| 44.85 | 0.312 | 10.9 | 0.653 | -- | -1.04 | -- | -- | -0.0861 | -- | 3.045 | 115 | -- | -- |
| 44.09 | 0.309 | 11 | -- | 0.732 | -0.673 | -- | -- | -0.184 | 22.4 | 5.18 | 205 | -- | -- |
| 150.69 | 0.574 | 11 | 0.679 | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
| 47.38 | 0.322 | 11 | -- | 1.35 | -- | -- | -- | -0.215 | 0.117 | -- | -- | -- | -- |
| 56.12 | 0.349 | 10.9 | -- | -- | -1.05 | -- | -- | -0.159 | -- | 4.017 | 125 | -- | -- |
| 162.84 | 0.596 | 11 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.40 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 3 | 27.77 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 4 | 27.87 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 8 | 27.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 11 | 28.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 16 | 28.53 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 17 | 28.55 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 33 | 28.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 48 | 28.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 53 | 28.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 54 | 28.99 | humidity | 60.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 55 | 29.01 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 57 | 29.01 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 61 | 29.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 67 | 29.07 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 69 | 29.08 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 98 | 29.20 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 9 |
| 103 | 29.21 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 106 | 29.22 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 124 | 29.26 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 1 | 12 |
| 126 | 29.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 128 | 29.27 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 146 | 29.30 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 10 |
| 169 | 29.35 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 175 | 29.36 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 178 | 29.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 185 | 29.39 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 190 | 29.40 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 195 | 29.41 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 206 | 29.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 216 | 29.46 | humidity | 80.0 | 90 | > th | dose independent | sin | 3 | NA |
| 276 | 29.56 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 9 |
| 399 | 29.76 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 411 | 29.77 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 444 | 29.82 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 447 | 29.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 558 | 29.93 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 569 | 29.94 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 21 |
| 608 | 29.98 | humidity | 90.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 619 | 29.99 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 632 | 30.00 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 19 |
| 710 | 30.09 | humidity | 80.0 | 90 | < th | dose independent | sin | 2 | NA |
| 842 | 30.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 844 | 30.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 853 | 30.22 | wind | 7.0 | 10 | < th | dose independent | rect. | 22 | 14 |
| 854 | 30.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 16 |
| 862 | 30.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 890 | 30.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 923 | 30.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 926 | 30.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 928 | 30.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 933 | 30.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 16 |
| 947 | 30.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 985 | 30.31 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 19 |