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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0736300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Membrane attack complex component/perforin/complement C9 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.58 (0.0321) R2 : 0.399
β1 : 1.58 (0.121) R2dD : 0.244 R2D : 0.0494
β2 : 0.708 (0.0788) R2dC : 0.111 R2C : 0.0241
β3 : -1.21 (0.102) R2dE : 0.224 R2E : -0.0491
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.616 (0.0707) R2dN8 : 0.147 R2N8 : -0.0157
σ : 0.596
deviance : 163.53
__
_____
C
peak time of C : 1.91
E
wheather : temperature
threshold : 23.21
memory length : 1271
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.88 0.566 3.54 2.04 0.715 -1.37 2.13 1.71 0.628 1.66 25.25 1263 -- --
145.33 0.561 3.58 1.72 0.719 -1.34 2.19 -- 0.65 1.64 23.61 1247 -- --
160.72 0.59 3.5 2.22 0.776 -1.53 -- 2.65 0.769 1.44 23.77 1144 -- --
163.53 0.596 3.58 1.58 0.708 -1.21 -- -- 0.616 1.91 23.21 1271 -- --
180.99 0.627 3.5 2.19 -- -1.4 -- 2.21 0.782 -- 23.95 1696 -- --
199.17 0.662 3.62 1.22 0.507 -- 1.95 -- 0.395 1.65 -- -- -- --
214.15 0.685 3.63 1.15 0.511 -- -- -- 0.383 1.94 -- -- -- --
180.61 0.626 3.57 1.59 -- -1.21 -- -- 0.641 -- 22.91 1714 -- --
221.77 0.694 3.64 -- 0.685 -0.846 -- -- 0.324 1.88 24.9 1249 -- --
229.9 0.708 3.62 1.17 -- -- -- -- 0.395 -- -- -- -- --
249.2 0.738 3.66 -- 0.532 -- -- -- 0.255 1.99 -- -- -- --
235.75 0.717 3.62 -- -- -1.09 -- -- 0.395 -- 22.91 1714 -- --
266.28 0.762 3.65 -- -- -- -- -- 0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.58 wind 9 43200 > th dose dependent rect. 19 13
3 141.14 wind 7 43200 > th dose dependent rect. 18 21
6 141.58 wind 9 43200 > th dose independent rect. 18 18
8 141.69 wind 9 43200 > th dose independent rect. 19 14
11 142.25 wind 9 43200 < th dose independent rect. 18 17
12 142.27 wind 9 43200 < th dose independent rect. 18 15
15 142.47 wind 5 43200 > th dose dependent rect. 5 10
21 142.76 wind 9 43200 > th dose independent sin 10 NA
28 142.93 wind 7 43200 > th dose independent rect. 6 1
40 143.29 wind 7 43200 > th dose dependent rect. 22 17
42 143.36 wind 7 43200 > th dose independent rect. 20 19
44 143.38 wind 9 43200 > th dose dependent sin 12 NA
47 143.47 wind 7 43200 > th dose independent rect. 18 21
49 143.51 wind 7 43200 < th dose independent rect. 6 1
50 143.51 wind 9 43200 < th dose independent rect. 17 22
52 143.54 wind 7 43200 > th dose independent rect. 23 16
60 143.62 wind 7 43200 < th dose independent rect. 23 16
61 143.65 wind 7 43200 < th dose independent rect. 20 19
68 143.75 wind 7 43200 > th dose independent rect. 4 11
69 143.76 wind 7 43200 < th dose independent rect. 4 11
76 143.82 wind 7 43200 > th dose independent rect. 6 9
79 143.83 wind 7 43200 > th dose independent rect. 2 13
81 143.85 wind 7 43200 < th dose independent rect. 6 9
85 143.86 wind 9 43200 > th dose dependent rect. 17 15
88 143.89 wind 7 43200 < th dose independent rect. 2 13
97 143.92 wind 5 43200 > th dose dependent sin 3 NA
98 143.93 temperature 25 1440 > th dose dependent rect. 17 17
105 143.98 wind 7 43200 > th dose independent sin 4 NA
116 144.08 wind 7 43200 < th dose independent sin 4 NA
131 144.17 wind 7 43200 > th dose dependent rect. 14 23
135 144.25 wind 9 43200 < th dose independent sin 10 NA
144 144.31 wind 7 43200 > th dose dependent rect. 4 21
154 144.34 wind 7 43200 > th dose dependent rect. 4 19
157 144.35 temperature 25 1440 > th dose dependent rect. 17 4
176 144.49 wind 7 43200 > th dose dependent rect. 24 22
187 144.52 wind 7 43200 > th dose dependent no NA NA
198 144.58 wind 7 43200 > th dose dependent rect. 7 23
212 144.64 wind 9 43200 > th dose dependent rect. 14 18
218 144.67 wind 7 43200 > th dose dependent rect. 7 15
224 144.68 wind 7 43200 > th dose dependent rect. 7 18
283 144.94 wind 9 43200 < th dose independent rect. 14 22
284 144.96 wind 9 43200 > th dose independent rect. 14 22
302 145.04 wind 7 43200 > th dose dependent sin 0 NA
337 145.20 temperature 25 1440 > th dose dependent sin 11 NA
426 145.80 wind 9 43200 < th dose independent rect. 8 13
427 145.81 wind 9 43200 < th dose independent rect. 8 17
457 145.92 wind 9 43200 < th dose independent rect. 4 17
466 145.96 wind 5 43200 > th dose dependent rect. 6 1
472 145.99 wind 9 43200 < th dose independent rect. 4 21
531 146.15 wind 9 43200 < th dose independent rect. 24 21
540 146.18 wind 9 43200 > th dose independent rect. 8 13
541 146.18 wind 9 43200 < th dose independent rect. 22 23
557 146.24 wind 9 43200 < th dose independent rect. 8 22
564 146.25 temperature 25 1440 > th dose dependent no NA NA
568 146.25 temperature 25 1440 > th dose dependent rect. 2 23
573 146.26 temperature 25 1440 > th dose dependent rect. 5 23
614 146.32 temperature 25 1440 > th dose dependent rect. 23 23
651 146.39 wind 9 43200 < th dose independent no NA NA
779 146.62 temperature 25 1440 > th dose independent rect. 17 7
811 146.68 wind 9 43200 < th dose independent sin 23 NA
813 146.68 wind 9 43200 > th dose independent rect. 9 22
835 146.72 wind 7 43200 > th dose independent rect. 4 23
840 146.73 wind 9 43200 > th dose independent rect. 4 17
848 146.74 wind 9 43200 > th dose independent rect. 4 19
855 146.75 wind 7 43200 > th dose independent rect. 23 23
878 146.80 wind 7 43200 > th dose independent no NA NA
880 146.80 wind 7 43200 > th dose independent rect. 2 23
932 146.91 wind 9 43200 > th dose independent sin 22 NA