Os02g0735800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0735800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.99 | 0.637 | 8.81 | -0.125 | 2.1 | 1.86 | -1.78 | 0.927 | -0.909 | 21 | 23 | 109 | -- | -- |
| 184.58 | 0.633 | 8.82 | -0.233 | 2.09 | 1.89 | -1.71 | -- | -0.951 | 21 | 23.2 | 113 | -- | -- |
| 194.35 | 0.649 | 8.8 | 0.0874 | 2.16 | 1.74 | -- | 1.73 | -0.873 | 20.9 | 22.64 | 89 | -- | -- |
| 195.95 | 0.652 | 8.83 | -0.204 | 2.13 | 1.89 | -- | -- | -0.95 | 21 | 23.1 | 100 | -- | -- |
| 353.9 | 0.876 | 8.87 | -0.934 | -- | 2.93 | -- | -2.58 | -1.24 | -- | 23.55 | 538 | -- | -- |
| 250.75 | 0.742 | 8.77 | 0.134 | 2.37 | -- | -1.44 | -- | -0.669 | 19.8 | -- | -- | -- | -- |
| 256.6 | 0.75 | 8.77 | 0.173 | 2.38 | -- | -- | -- | -0.67 | 19.8 | -- | -- | -- | -- |
| 357.14 | 0.88 | 8.79 | -0.404 | -- | 2.68 | -- | -- | -1.03 | -- | 23.75 | 538 | -- | -- |
| 196.95 | 0.654 | 8.82 | -- | 2.13 | 1.85 | -- | -- | -0.916 | 21 | 23.14 | 100 | -- | -- |
| 562.37 | 1.11 | 8.71 | 0.144 | -- | -- | -- | -- | -0.704 | -- | -- | -- | -- | -- |
| 257.39 | 0.75 | 8.78 | -- | 2.38 | -- | -- | -- | -0.689 | 19.8 | -- | -- | -- | -- |
| 360.8 | 0.885 | 8.77 | -- | -- | 2.61 | -- | -- | -0.945 | -- | 23.99 | 535 | -- | -- |
| 562.92 | 1.11 | 8.72 | -- | -- | -- | -- | -- | -0.72 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.09 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 3 | 172.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 8 | 173.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 9 | 173.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 22 | 175.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 24 | 176.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 29 | 176.62 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 44 | 177.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 202 | 183.60 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 205 | 183.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 253 | 184.71 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 304 | 185.46 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 361 | 186.25 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 371 | 186.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 411 | 186.80 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 415 | 186.87 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 439 | 187.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 483 | 187.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 490 | 187.62 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 509 | 187.77 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 515 | 187.79 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 520 | 187.86 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 601 | 188.44 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 728 | 189.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |