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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0733300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0335) R2 : 0.00328
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0864 (0.0705) R2dN8 : 0.00424 R2N8 : 0.00328
σ : 0.631
deviance : 182.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.65 0.608 3.4 -0.0623 0.244 -0.451 -0.792 -0.0993 -0.088 3.54 1.2 15 -- --
167.66 0.603 3.4 -0.0669 0.243 -0.457 -0.779 -- -0.089 3.54 1.199 14 -- --
169.47 0.606 3.4 -0.0602 0.244 -0.452 -- 0.199 -0.0869 3.67 1.198 14 -- --
169.51 0.606 3.4 -0.0509 0.246 -0.438 -- -- -0.0848 3.69 1.147 14 -- --
172.2 0.611 3.4 -0.074 -- -0.593 -- 0.306 -0.08 -- 1.167 14 -- --
172.96 0.617 3.4 -0.0064 0.386 -- -0.702 -- -0.0984 3.83 -- -- -- --
174.41 0.618 3.4 0.00361 0.383 -- -- -- -0.0944 3.92 -- -- -- --
172.3 0.611 3.4 -0.0594 -- -0.573 -- -- -0.0766 -- 1.169 14 -- --
169.58 0.607 3.4 -- 0.247 -0.432 -- -- -0.0797 3.7 1.133 14 -- --
182.46 0.631 3.4 0.0194 -- -- -- -- -0.0842 -- -- -- -- --
174.41 0.618 3.4 -- 0.383 -- -- -- -0.0948 3.92 -- -- -- --
172.39 0.612 3.4 -- -- -0.567 -- -- -0.0701 -- 1.176 14 -- --
182.47 0.631 3.4 -- -- -- -- -- -0.0864 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.71 radiation 10.0 30 > th dose independent rect. 7 1
2 165.84 humidity 80.0 10 < th dose independent rect. 5 3
3 165.84 humidity 80.0 10 < th dose independent rect. 22 10
6 165.89 humidity 80.0 10 < th dose independent rect. 1 7
10 165.94 humidity 80.0 10 < th dose independent rect. 7 1
12 166.11 temperature 25.0 30 > th dose independent rect. 7 1
13 166.16 radiation 10.0 10 > th dose independent rect. 16 16
15 166.72 wind 1.0 10 > th dose independent rect. 8 23
31 167.34 temperature 25.0 270 < th dose independent rect. 22 3
32 167.35 atmosphere 1000.0 10 < th dose independent rect. 1 1
39 167.35 atmosphere 1000.0 10 < th dose dependent rect. 1 1
49 167.57 humidity 70.0 720 < th dose independent rect. 19 14
51 167.73 temperature 25.0 270 > th dose independent sin 13 NA
53 167.74 wind 1.0 10 > th dose independent rect. 13 23
62 167.85 atmosphere 1010.0 30 < th dose dependent rect. 2 1
66 167.88 humidity 90.0 270 > th dose dependent rect. 4 1
68 167.97 wind 1.0 90 < th dose independent rect. 4 1
74 168.05 wind 3.0 270 < th dose dependent rect. 4 1
76 168.09 humidity 70.0 720 > th dose independent rect. 19 15
78 168.17 temperature 25.0 270 > th dose independent rect. 17 11
94 168.29 humidity 80.0 1440 < th dose independent rect. 7 1
97 168.31 humidity 80.0 1440 < th dose independent rect. 2 6
99 168.31 radiation 1.0 10 < th dose dependent rect. 5 11
100 168.32 humidity 80.0 1440 < th dose independent rect. 24 8
105 168.36 wind 1.0 30 > th dose independent rect. 2 1
110 168.41 radiation 1.0 10 < th dose dependent rect. 5 3
114 168.42 temperature 25.0 30 < th dose independent rect. 2 1
116 168.43 radiation 1.0 270 < th dose independent rect. 7 10
120 168.44 temperature 20.0 30 > th dose dependent rect. 2 1
122 168.46 temperature 20.0 30 > th dose independent rect. 2 1
127 168.47 wind 3.0 30 < th dose independent rect. 2 1
129 168.48 humidity 80.0 30 > th dose independent rect. 2 1
130 168.48 humidity 50.0 30 > th dose dependent rect. 2 1
136 168.49 temperature 10.0 30 > th dose independent rect. 2 1
139 168.49 humidity 50.0 30 > th dose independent rect. 2 1
143 168.49 atmosphere 995.0 30 > th dose independent rect. 2 1
144 168.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
146 168.49 radiation 1.0 30 < th dose independent rect. 2 1
151 168.49 precipitation 0.1 30 < th dose independent rect. 2 1
153 168.49 temperature 10.0 30 > th dose independent rect. 3 23
154 168.49 radiation 1.0 30 < th dose dependent rect. 2 1
159 168.49 precipitation 0.1 30 < th dose dependent rect. 2 1
161 168.50 wind 9.0 30 < th dose dependent rect. 2 1
171 168.55 humidity 70.0 270 > th dose independent rect. 21 13
174 168.57 humidity 80.0 270 < th dose independent rect. 7 1
175 168.57 radiation 1.0 270 < th dose independent rect. 10 6
178 168.58 temperature 30.0 30 < th dose dependent rect. 2 1
186 168.61 radiation 1.0 270 < th dose independent rect. 14 2
187 168.62 atmosphere 1005.0 30 > th dose dependent rect. 2 1
189 168.63 humidity 80.0 1440 > th dose independent rect. 2 6
190 168.63 wind 1.0 10 > th dose independent rect. 8 21
191 168.63 wind 9.0 30 < th dose independent rect. 3 23
194 168.64 atmosphere 995.0 30 > th dose dependent rect. 2 1
195 168.65 wind 9.0 4320 < th dose independent rect. 3 1
197 168.65 wind 1.0 720 > th dose dependent rect. 23 2
198 168.66 atmosphere 1005.0 1440 < th dose independent rect. 15 1
201 168.67 wind 9.0 4320 < th dose independent rect. 3 6
203 168.68 wind 1.0 10 > th dose independent sin 0 NA
207 168.68 wind 5.0 30 < th dose dependent rect. 2 6
208 168.69 atmosphere 1005.0 30 > th dose independent rect. 2 1
210 168.69 wind 1.0 10 < th dose independent rect. 2 10
218 168.71 wind 1.0 10 > th dose independent rect. 22 13
226 168.75 atmosphere 1005.0 270 < th dose dependent rect. 18 1
229 168.77 temperature 25.0 270 < th dose independent sin 12 NA
231 168.77 temperature 20.0 90 > th dose dependent rect. 1 4
234 168.78 temperature 25.0 270 < th dose independent rect. 19 7
241 168.80 atmosphere 1010.0 30 < th dose independent rect. 2 6
269 168.83 radiation 1.0 720 < th dose independent rect. 17 8
289 168.87 humidity 80.0 1440 > th dose independent rect. 6 2
292 168.87 wind 3.0 10 < th dose dependent rect. 2 21
301 168.90 temperature 25.0 10 > th dose dependent rect. 7 1
302 168.90 humidity 90.0 30 > th dose dependent rect. 4 4
310 168.93 temperature 25.0 720 > th dose independent rect. 10 16
322 168.96 humidity 80.0 270 < th dose independent rect. 24 8
326 168.97 wind 1.0 10 < th dose independent rect. 4 23
329 168.98 precipitation 0.1 10 > th dose independent rect. 7 13
336 168.98 precipitation 0.1 10 > th dose dependent rect. 7 13
342 168.99 wind 3.0 270 > th dose independent rect. 22 11
355 169.00 wind 3.0 90 < th dose dependent rect. 2 10
358 169.01 radiation 1.0 10 < th dose independent rect. 5 11
363 169.03 wind 3.0 720 > th dose independent rect. 24 1
366 169.03 temperature 25.0 270 < th dose independent rect. 15 11
367 169.03 humidity 70.0 720 > th dose independent rect. 22 11
368 169.04 wind 5.0 30 < th dose independent rect. 2 6
375 169.06 wind 1.0 10 < th dose independent rect. 9 3
383 169.06 humidity 90.0 10 > th dose dependent rect. 4 15
385 169.06 wind 3.0 90 < th dose dependent rect. 2 20
390 169.07 wind 1.0 720 > th dose independent rect. 14 20
391 169.07 temperature 20.0 270 > th dose dependent rect. 1 1
393 169.08 humidity 50.0 1440 < th dose independent rect. 16 1
401 169.08 precipitation 0.1 10 < th dose independent rect. 3 23
402 169.08 temperature 20.0 30 > th dose dependent rect. 21 1
403 169.08 atmosphere 1005.0 4320 > th dose dependent rect. 5 1
404 169.08 atmosphere 1005.0 4320 > th dose dependent rect. 3 3
406 169.08 precipitation 0.1 10 < th dose dependent rect. 3 23
410 169.09 wind 1.0 10 > th dose independent rect. 3 23
411 169.09 atmosphere 1005.0 4320 > th dose dependent rect. 3 1
417 169.10 humidity 60.0 14400 < th dose independent rect. 17 17
420 169.11 atmosphere 1005.0 1440 > th dose independent rect. 15 2
422 169.11 wind 1.0 720 > th dose independent rect. 22 4
423 169.11 temperature 20.0 90 > th dose independent rect. 1 4
426 169.11 wind 1.0 10 < th dose independent rect. 2 22
428 169.11 radiation 1.0 720 < th dose dependent rect. 17 8
429 169.11 wind 1.0 10 < th dose dependent rect. 9 14
434 169.12 humidity 50.0 1440 < th dose dependent rect. 16 1
437 169.12 humidity 70.0 720 < th dose dependent rect. 19 13
438 169.13 wind 1.0 10 < th dose independent rect. 22 1
445 169.13 wind 1.0 10 > th dose independent rect. 1 23
446 169.13 wind 1.0 10 < th dose dependent rect. 22 1
453 169.14 radiation 1.0 10 < th dose independent rect. 5 3
460 169.14 wind 1.0 10 > th dose independent rect. 22 23
482 169.16 humidity 50.0 14400 < th dose independent rect. 16 20
483 169.16 humidity 90.0 10 > th dose dependent rect. 4 2
484 169.16 humidity 80.0 1440 < th dose dependent rect. 6 3
485 169.16 humidity 70.0 720 < th dose dependent rect. 18 16
496 169.18 humidity 60.0 14400 > th dose independent rect. 17 17
497 169.18 temperature 25.0 270 < th dose independent rect. 7 19
501 169.19 wind 1.0 10 > th dose independent no NA NA
518 169.21 wind 1.0 10 < th dose independent rect. 2 8
523 169.21 radiation 40.0 30 < th dose independent rect. 8 18
524 169.21 humidity 50.0 14400 > th dose independent rect. 16 20
528 169.22 atmosphere 1005.0 1440 < th dose independent rect. 11 5
534 169.22 wind 3.0 30 < th dose dependent rect. 2 8
535 169.23 wind 1.0 10 > th dose independent sin 8 NA
536 169.23 wind 1.0 10 < th dose independent rect. 2 4
539 169.23 atmosphere 1000.0 30 > th dose independent rect. 2 6
546 169.23 humidity 60.0 14400 < th dose dependent rect. 16 19
560 169.26 atmosphere 1005.0 10 > th dose independent rect. 12 1
568 169.27 wind 1.0 720 > th dose independent rect. 13 13
572 169.27 temperature 25.0 270 > th dose dependent rect. 23 1
575 169.27 temperature 25.0 720 > th dose dependent rect. 15 11
582 169.28 temperature 25.0 1440 > th dose dependent rect. 15 1
587 169.29 radiation 40.0 10 > th dose independent rect. 12 1
603 169.30 wind 3.0 10 < th dose dependent rect. 2 11
619 169.31 temperature 25.0 720 > th dose dependent rect. 15 17
625 169.32 precipitation 0.1 10 > th dose independent rect. 4 16
636 169.33 radiation 1.0 43200 < th dose dependent rect. 3 1
654 169.35 temperature 25.0 10 < th dose independent rect. 4 4
661 169.35 humidity 50.0 30 > th dose independent rect. 8 18
665 169.35 radiation 30.0 10 > th dose dependent rect. 12 1
675 169.36 precipitation 0.1 30 > th dose independent rect. 1 19
682 169.36 atmosphere 1005.0 10 < th dose dependent rect. 5 1
685 169.37 humidity 50.0 1440 > th dose independent rect. 16 1
686 169.37 temperature 25.0 10 < th dose independent rect. 4 2
688 169.37 temperature 25.0 10 < th dose independent rect. 2 6
694 169.38 wind 3.0 720 < th dose independent rect. 24 7
697 169.38 radiation 10.0 10 < th dose independent rect. 22 12
704 169.39 atmosphere 1010.0 1440 > th dose independent rect. 9 1
708 169.39 wind 1.0 10 < th dose independent rect. 4 19
710 169.39 wind 1.0 10 > th dose independent rect. 17 23
713 169.40 temperature 25.0 1440 < th dose independent rect. 7 1
714 169.40 wind 3.0 720 < th dose independent rect. 1 2
715 169.40 temperature 15.0 1440 > th dose independent rect. 3 3
722 169.40 radiation 1.0 720 > th dose independent rect. 17 13
725 169.40 temperature 25.0 720 > th dose independent rect. 7 20
735 169.41 temperature 25.0 720 > th dose independent rect. 15 6
744 169.41 humidity 50.0 30 > th dose independent rect. 3 23
757 169.42 wind 1.0 720 > th dose independent rect. 22 22
773 169.44 wind 7.0 1440 < th dose independent rect. 5 1
775 169.44 temperature 10.0 1440 > th dose independent rect. 5 1
778 169.44 temperature 30.0 1440 < th dose independent rect. 5 1
782 169.44 humidity 50.0 1440 > th dose independent rect. 5 1
791 169.44 atmosphere 995.0 1440 > th dose independent rect. 5 1
793 169.44 atmosphere 1015.0 1440 < th dose independent rect. 5 1
794 169.44 radiation 20.0 1440 < th dose independent rect. 5 1
811 169.44 temperature 10.0 1440 > th dose independent rect. 6 23
815 169.44 wind 5.0 720 < th dose dependent rect. 24 5
818 169.44 wind 9.0 720 < th dose dependent rect. 24 8
819 169.44 humidity 90.0 10 > th dose dependent rect. 4 18
821 169.44 precipitation 0.1 30 > th dose dependent rect. 1 19
826 169.45 precipitation 0.1 10 > th dose independent rect. 17 3
857 169.45 precipitation 0.1 10 > th dose dependent rect. 17 3
893 169.46 wind 1.0 10 < th dose dependent rect. 15 8
898 169.47 temperature 25.0 1440 > th dose independent rect. 7 1
922 169.48 wind 1.0 10 > th dose independent rect. 22 9
930 169.49 temperature 25.0 720 > th dose independent rect. 23 1
941 169.49 wind 1.0 10 > th dose independent rect. 6 23
947 169.50 wind 3.0 10 < th dose independent rect. 20 2
960 169.51 wind 5.0 720 < th dose independent rect. 20 1
961 169.51 wind 1.0 4320 < th dose independent rect. 24 1
962 169.51 temperature 15.0 1440 > th dose independent rect. 3 1
972 169.51 temperature 25.0 720 > th dose dependent sin 13 NA