Os02g0732700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0732700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.28 | 0.245 | 11 | 1.21 | 0.213 | 0.152 | 0.227 | -1.45 | 0.54 | 19.8 | 24.53 | 1221 | -- | -- |
| 29.65 | 0.254 | 11.1 | 0.987 | 0.219 | 0.281 | 0.302 | -- | 0.456 | 19.7 | 18.17 | 22820 | -- | -- |
| 27.35 | 0.244 | 11 | 1.19 | 0.221 | 0.147 | -- | -1.42 | 0.539 | 19.8 | 24.5 | 1097 | -- | -- |
| 29.58 | 0.253 | 11.1 | 0.989 | 0.213 | 0.314 | -- | -- | 0.453 | 19.3 | 16.76 | 26739 | -- | -- |
| 29.9 | 0.255 | 11 | 1.2 | -- | 0.149 | -- | -1.43 | 0.528 | -- | 24.6 | 1239 | -- | -- |
| 30.48 | 0.259 | 11.1 | 0.729 | 0.213 | -- | 0.309 | -- | 0.37 | 19.8 | -- | -- | -- | -- |
| 30.69 | 0.259 | 11.1 | 0.722 | 0.218 | -- | -- | -- | 0.371 | 19.2 | -- | -- | -- | -- |
| 32.06 | 0.264 | 11.1 | 0.984 | -- | 0.313 | -- | -- | 0.447 | -- | 16.4 | 27115 | -- | -- |
| 34.56 | 0.274 | 11.1 | -- | 0.217 | -0.461 | -- | -- | 0.132 | 19.1 | 21.8 | 47520 | -- | -- |
| 33.22 | 0.269 | 11.1 | 0.718 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 44.44 | 0.312 | 11.1 | -- | 0.212 | -- | -- | -- | 0.29 | 19.4 | -- | -- | -- | -- |
| 37.03 | 0.283 | 11.1 | -- | -- | -0.466 | -- | -- | 0.135 | -- | 21.07 | 47520 | -- | -- |
| 46.83 | 0.319 | 11.1 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 2 | 26.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 9 | 26.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 13 | 26.23 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 4 |
| 17 | 26.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 65 | 26.45 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 76 | 26.49 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 82 | 26.50 | temperature | 25 | 720 | > th | dose independent | sin | 12 | NA |
| 91 | 26.51 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 164 | 26.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 166 | 26.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 173 | 26.79 | temperature | 25 | 720 | < th | dose independent | sin | 10 | NA |
| 232 | 26.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 234 | 26.97 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 242 | 26.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 266 | 27.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 309 | 27.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 326 | 27.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 453 | 27.29 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 465 | 27.31 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 7 |
| 502 | 27.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 12 |
| 511 | 27.36 | humidity | 90 | 720 | > th | dose independent | rect. | 23 | 2 |
| 514 | 27.36 | humidity | 90 | 720 | > th | dose dependent | sin | 15 | NA |
| 521 | 27.37 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 7 |
| 526 | 27.37 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 601 | 27.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 626 | 27.44 | humidity | 90 | 720 | > th | dose independent | sin | 13 | NA |
| 632 | 27.44 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 708 | 27.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 800 | 27.54 | wind | 1 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 847 | 27.56 | humidity | 90 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 854 | 27.57 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 22 |
| 857 | 27.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 872 | 27.58 | humidity | 90 | 720 | > th | dose independent | rect. | 18 | 14 |
| 875 | 27.58 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 18 |
| 892 | 27.59 | humidity | 90 | 720 | > th | dose independent | rect. | 7 | 20 |
| 981 | 27.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 982 | 27.63 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 990 | 27.63 | humidity | 90 | 720 | > th | dose independent | rect. | 18 | 21 |
| 992 | 27.63 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |