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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0732400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ZIM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.45 (0.0728) R2 : 0.706
β1 : -6.13 (0.294) R2dD : 0.366 R2D : 0.116
β2 : 3.52 (0.182) R2dC : 0.244 R2C : 0.156
β3 : -3.7 (0.291) R2dE : 0.116 R2E : -0.0468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.76 (0.992) R2dD*E : 0.0263 R2D*E : -0.135
γ1 : -3.14 (0.163) R2dN8 : 0.365 R2N8 : 0.0346
σ : 1.34
deviance : 828.48
__
_____
C
peak time of C : 8.13
E
wheather : radiation
threshold : 7.222
memory length : 1429
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
827.65 1.35 6.45 -6.09 3.53 -3.75 0.738 5.7 -3.13 8.12 7.35 1430 12.9 --
873.92 1.38 6.46 -5.84 3.46 -3.81 0.608 -- -3.1 8.21 5.06 1445 16.1 --
828.48 1.34 6.45 -6.13 3.52 -3.7 -- 5.76 -3.14 8.13 7.222 1429 13.5 --
874.97 1.38 6.46 -5.81 3.39 -3.79 -- -- -3.09 8.26 5.051 1452 16.2 --
1182.63 1.6 6.3 -4.7 -- -3.61 -- 0.983 -2.18 -- 94.48 112 11.2 --
1147.75 1.59 6.31 -5.32 3.5 -- 0.444 -- -2.4 8.19 -- -- -- --
1148.33 1.59 6.31 -5.3 3.5 -- -- -- -2.4 8.21 -- -- -- --
1148.45 1.58 6.41 -5.31 -- -3.52 -- -- -2.43 -- 249.8 47 10.4 --
1666.02 1.9 6.28 -- 3.61 -2.86 -- -- -2.43 8.23 9.997 1464 15.8 --
1825.04 2 6.4 -5.28 -- -- -- -- -2.36 -- -- -- -- --
1889.58 2.03 6.17 -- 3.48 -- -- -- -1.81 8.32 -- -- -- --
1829.82 1.99 6.47 -- -- -6.6 -- -- -2.57 -- 10 1534 10.1 --
2559.56 2.36 6.27 -- -- -- -- -- -1.78 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 841.40 radiation 10 1440 < th dose dependent rect. 13 7
3 841.55 radiation 10 1440 < th dose dependent rect. 13 15
12 842.90 radiation 10 1440 < th dose dependent sin 18 NA
17 846.18 radiation 10 1440 < th dose dependent rect. 9 11
19 846.29 radiation 10 1440 < th dose dependent rect. 9 19
28 847.66 humidity 80 1440 > th dose independent sin 0 NA
29 847.83 humidity 80 1440 < th dose independent sin 1 NA
30 847.91 humidity 70 1440 > th dose dependent rect. 9 6
31 848.03 humidity 60 1440 > th dose dependent rect. 9 10
32 848.08 humidity 80 1440 > th dose independent rect. 7 10
63 849.81 humidity 70 1440 > th dose dependent rect. 10 4
67 850.40 humidity 80 1440 > th dose independent rect. 9 7
68 850.76 humidity 80 1440 < th dose independent rect. 7 10
71 851.33 humidity 80 1440 < th dose independent rect. 9 6
112 852.77 humidity 80 1440 < th dose independent rect. 5 12
116 852.88 humidity 90 1440 < th dose dependent rect. 9 10
123 853.08 humidity 60 1440 > th dose dependent sin 23 NA
147 854.00 humidity 50 1440 > th dose dependent rect. 3 16
229 856.58 humidity 90 1440 < th dose dependent rect. 2 17
243 856.99 humidity 90 1440 < th dose dependent sin 23 NA
245 857.08 humidity 60 1440 > th dose dependent rect. 11 2
262 857.56 radiation 10 1440 < th dose dependent rect. 15 2
523 865.19 humidity 70 1440 > th dose independent rect. 11 9
526 865.23 humidity 70 1440 > th dose independent rect. 11 18
620 867.80 humidity 50 1440 > th dose dependent rect. 9 21
635 868.51 humidity 90 1440 < th dose dependent rect. 11 2
686 869.68 humidity 90 1440 < th dose dependent rect. 9 21
696 870.04 radiation 10 1440 > th dose independent rect. 9 9
711 870.23 humidity 70 1440 > th dose independent sin 18 NA
891 874.11 humidity 90 720 < th dose dependent rect. 19 2
936 875.01 radiation 10 1440 > th dose independent sin 18 NA
938 875.07 humidity 90 1440 < th dose dependent no NA NA
951 875.25 humidity 50 1440 > th dose dependent no NA NA