Os02g0731300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0731300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.5 | 0.626 | 9.08 | -0.925 | 2.32 | -0.972 | 0.622 | -0.782 | 0.225 | 8.96 | 67 | 4692 | -- | -- |
| 178.39 | 0.622 | 9.08 | -0.917 | 2.31 | -1 | 0.622 | -- | 0.231 | 8.99 | 67.19 | 4707 | -- | -- |
| 178.81 | 0.623 | 9.08 | -0.913 | 2.32 | -0.981 | -- | -0.815 | 0.226 | 8.95 | 67 | 4706 | -- | -- |
| 179.76 | 0.624 | 9.08 | -0.892 | 2.31 | -1.03 | -- | -- | 0.219 | 8.97 | 67 | 4692 | -- | -- |
| 346.25 | 0.867 | 9.08 | -0.645 | -- | -1.82 | -- | 1.14 | 0.587 | -- | 79 | 725 | -- | -- |
| 196.43 | 0.657 | 9.07 | -0.89 | 2.36 | -- | 0.711 | -- | 0.264 | 8.86 | -- | -- | -- | -- |
| 198.14 | 0.659 | 9.07 | -0.866 | 2.36 | -- | -- | -- | 0.264 | 8.85 | -- | -- | -- | -- |
| 328.52 | 0.844 | 9.13 | -0.703 | -- | -2.2 | -- | -- | 0.299 | -- | 78 | 751 | -- | -- |
| 200.48 | 0.659 | 9.04 | -- | 2.3 | -0.981 | -- | -- | 0.373 | 8.77 | 69 | 3984 | -- | -- |
| 515.67 | 1.06 | 9.13 | -0.865 | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
| 217.9 | 0.691 | 9.05 | -- | 2.36 | -- | -- | -- | 0.36 | 8.88 | -- | -- | -- | -- |
| 335.82 | 0.854 | 9.09 | -- | -- | -2.46 | -- | -- | 0.457 | -- | 74.72 | 764 | -- | -- |
| 535.41 | 1.08 | 9.11 | -- | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.15 | wind | 1 | 90 | < th | dose independent | rect. | 7 | 8 |
| 3 | 167.69 | wind | 1 | 90 | < th | dose independent | rect. | 7 | 10 |
| 12 | 169.96 | radiation | 20 | 10 | < th | dose dependent | sin | 4 | NA |
| 13 | 170.10 | wind | 1 | 90 | < th | dose dependent | rect. | 7 | 7 |
| 18 | 170.36 | wind | 1 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 24 | 170.47 | wind | 1 | 90 | > th | dose independent | rect. | 11 | 9 |
| 42 | 170.90 | wind | 1 | 90 | < th | dose independent | rect. | 9 | 6 |
| 43 | 170.91 | radiation | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 47 | 171.03 | radiation | 10 | 90 | < th | dose dependent | sin | 4 | NA |
| 75 | 172.05 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 16 |
| 85 | 172.41 | wind | 1 | 90 | < th | dose independent | sin | 22 | NA |
| 94 | 172.74 | wind | 1 | 90 | < th | dose independent | rect. | 9 | 8 |
| 96 | 172.91 | wind | 1 | 30 | < th | dose dependent | sin | 21 | NA |
| 114 | 173.37 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 120 | 173.44 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 124 | 173.52 | wind | 1 | 90 | > th | dose independent | sin | 22 | NA |
| 127 | 173.54 | radiation | 20 | 10 | < th | dose independent | sin | 7 | NA |
| 137 | 173.77 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 138 | 173.78 | wind | 1 | 30 | < th | dose dependent | rect. | 10 | 5 |
| 140 | 173.83 | wind | 1 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 142 | 173.86 | wind | 1 | 10 | < th | dose independent | rect. | 12 | 2 |
| 150 | 173.90 | radiation | 10 | 90 | > th | dose independent | sin | 5 | NA |
| 154 | 173.95 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 17 |
| 166 | 174.10 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 4 |
| 172 | 174.13 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 2 |
| 190 | 174.36 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 206 | 174.60 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 4 |
| 233 | 174.74 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 8 |
| 252 | 174.80 | temperature | 10 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 255 | 174.86 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 259 | 174.92 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 2 |
| 266 | 174.98 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 2 |
| 295 | 175.15 | wind | 1 | 270 | > th | dose independent | rect. | 11 | 19 |
| 383 | 175.77 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 8 |
| 400 | 175.85 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 402 | 175.87 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 14 |
| 472 | 176.25 | wind | 1 | 90 | > th | dose independent | rect. | 11 | 22 |
| 482 | 176.27 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 14 |
| 512 | 176.41 | humidity | 70 | 720 | > th | dose independent | rect. | 20 | 17 |
| 514 | 176.41 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 517 | 176.47 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 16 |
| 522 | 176.48 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 16 |
| 589 | 176.94 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 603 | 177.01 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 9 |
| 640 | 177.13 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 667 | 177.21 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 669 | 177.23 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 3 |
| 679 | 177.28 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 16 |
| 683 | 177.31 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 18 |
| 708 | 177.43 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 5 |
| 751 | 177.62 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 6 | 17 |
| 766 | 177.66 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 7 |
| 771 | 177.70 | radiation | 10 | 90 | < th | dose independent | sin | 4 | NA |
| 791 | 177.77 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 2 |
| 792 | 177.77 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 17 |
| 798 | 177.79 | radiation | 1 | 90 | > th | dose dependent | sin | 8 | NA |
| 805 | 177.85 | wind | 1 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 831 | 177.98 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 17 |
| 848 | 178.03 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 849 | 178.03 | radiation | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 858 | 178.05 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 871 | 178.09 | wind | 5 | 30 | < th | dose dependent | rect. | 7 | 18 |
| 897 | 178.15 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 5 |
| 906 | 178.18 | temperature | 15 | 270 | > th | dose independent | rect. | 22 | 8 |
| 910 | 178.21 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 912 | 178.21 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 914 | 178.22 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 917 | 178.23 | humidity | 90 | 10 | < th | dose independent | rect. | 7 | 7 |
| 920 | 178.23 | wind | 5 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 938 | 178.27 | radiation | 1 | 270 | < th | dose independent | sin | 7 | NA |
| 987 | 178.35 | wind | 3 | 90 | < th | dose independent | rect. | 9 | 2 |
| 993 | 178.36 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 995 | 178.37 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 7 |