Os02g0730900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0730900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.5 | 0.35 | 9.28 | 1.09 | 2.44 | 1.56 | -0.851 | -0.376 | -0.25 | 19.3 | 23.57 | 134 | -- | -- |
| 55.42 | 0.347 | 9.27 | 1.14 | 2.41 | 1.52 | -0.9 | -- | -0.231 | 19.3 | 23.57 | 159 | -- | -- |
| 57.31 | 0.353 | 9.29 | 1.05 | 2.42 | 1.56 | -- | -0.735 | -0.264 | 19.3 | 23.53 | 149 | -- | -- |
| 57.57 | 0.353 | 9.28 | 1.16 | 2.44 | 1.48 | -- | -- | -0.235 | 19.3 | 23.41 | 148 | -- | -- |
| 233.13 | 0.711 | 9.31 | 0.308 | -- | 3.5 | -- | -3.5 | -0.46 | -- | 24.46 | 438 | -- | -- |
| 93.89 | 0.454 | 9.24 | 1.44 | 2.9 | -- | -0.443 | -- | -0.035 | 18.7 | -- | -- | -- | -- |
| 94.39 | 0.455 | 9.24 | 1.45 | 2.9 | -- | -- | -- | -0.0362 | 18.7 | -- | -- | -- | -- |
| 243.12 | 0.726 | 9.24 | 0.848 | -- | 3.16 | -- | -- | -0.389 | -- | 24.4 | 423 | -- | -- |
| 91.16 | 0.445 | 9.31 | -- | 2.35 | 1.73 | -- | -- | -0.38 | 19.3 | 22.8 | 187 | -- | -- |
| 532.44 | 1.08 | 9.18 | 1.38 | -- | -- | -- | -- | -0.0944 | -- | -- | -- | -- | -- |
| 149.67 | 0.572 | 9.27 | -- | 2.88 | -- | -- | -- | -0.198 | 18.7 | -- | -- | -- | -- |
| 260.98 | 0.752 | 9.27 | -- | -- | 3.29 | -- | -- | -0.51 | -- | 24.25 | 430 | -- | -- |
| 582.68 | 1.13 | 9.21 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.89 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 2 | 53.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 7 | 54.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 18 | 54.98 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 19 | 54.99 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 96 | 56.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 113 | 56.29 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 114 | 56.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 115 | 56.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 117 | 56.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 159 | 56.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 221 | 56.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 438 | 58.09 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 596 | 59.35 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 816 | 61.25 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 14 |
| 818 | 61.26 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 941 | 62.32 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 942 | 62.32 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 14 |
| 982 | 62.64 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |