Os02g0730700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os02g0730700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.17 | 0.309 | 14.1 | 0.643 | 0.6 | 1.29 | -0.0419 | -0.0803 | 0.25 | 23.8 | 9.896 | 600 | -- | -- |
| 43.17 | 0.306 | 14.1 | 0.657 | 0.598 | 1.28 | -0.0504 | -- | 0.254 | 23.8 | 9.921 | 603 | -- | -- |
| 43.17 | 0.306 | 14.1 | 0.64 | 0.6 | 1.29 | -- | -0.106 | 0.249 | 23.8 | 9.872 | 600 | -- | -- |
| 43.18 | 0.306 | 14.1 | 0.659 | 0.6 | 1.28 | -- | -- | 0.254 | 23.8 | 9.884 | 600 | -- | -- |
| 59.66 | 0.36 | 14.1 | 0.541 | -- | 1.63 | -- | -0.051 | 0.195 | -- | 12.94 | 795 | -- | -- |
| 62.81 | 0.372 | 14.1 | 0.968 | 0.801 | -- | 0.0532 | -- | 0.449 | 22.3 | -- | -- | -- | -- |
| 62.82 | 0.371 | 14.1 | 0.966 | 0.801 | -- | -- | -- | 0.449 | 22.3 | -- | -- | -- | -- |
| 59.66 | 0.36 | 14.1 | 0.55 | -- | 1.63 | -- | -- | 0.198 | -- | 12.92 | 795 | -- | -- |
| 46.25 | 0.317 | 14.2 | -- | 0.78 | 1.09 | -- | -- | 0.0391 | 22.2 | 10.95 | 23306 | -- | -- |
| 101.93 | 0.472 | 14 | 0.978 | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
| 87.41 | 0.437 | 14.1 | -- | 0.807 | -- | -- | -- | 0.341 | 22.4 | -- | -- | -- | -- |
| 66.78 | 0.381 | 14.1 | -- | -- | 1.84 | -- | -- | 0.109 | -- | 12.09 | 813 | -- | -- |
| 127.17 | 0.526 | 14.1 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 3 | 39.91 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 5 | 39.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 29 | 40.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 53 | 40.77 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 93 | 41.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 102 | 41.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 144 | 41.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 158 | 41.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 488 | 42.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 583 | 42.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 595 | 42.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 781 | 43.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 882 | 43.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 953 | 43.38 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 962 | 43.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 963 | 43.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 977 | 43.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 980 | 43.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |