Os02g0729400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhodanese-like domain containing protein.
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Os02g0729400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhodanese-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.08 | 0.465 | 14 | -1.21 | 3.49 | 2.01 | 2.19 | -0.289 | -0.609 | 8.57 | 30 | 673 | 10 | 5.12 |
| 98.11 | 0.461 | 14 | -1.23 | 3.49 | 2.1 | 2.29 | -- | -0.616 | 8.55 | 29.94 | 652 | 10.1 | 5.22 |
| 105.96 | 0.479 | 13.9 | -0.94 | 3.86 | 2.08 | -- | -3.52 | -0.66 | 8.65 | 32.55 | 606 | 10.1 | 8.03 |
| 114.2 | 0.498 | 14 | -1.14 | 3.57 | 2.28 | -- | -- | -0.615 | 8.58 | 30.16 | 656 | 10.3 | 5.32 |
| 527.61 | 1.08 | 14.1 | -1.59 | -- | 1.86 | -- | 1.57 | -0.9 | -- | 47.06 | 3049 | 3.55 | 7.98 |
| 140.1 | 0.555 | 14.1 | -1.67 | 3.16 | -- | 2.69 | -- | -0.887 | 8.86 | -- | -- | -- | -- |
| 164.55 | 0.601 | 14.1 | -1.58 | 3.15 | -- | -- | -- | -0.884 | 8.91 | -- | -- | -- | -- |
| 193.02 | 0.647 | 14.2 | -1.83 | -- | 2.79 | -- | -- | -0.881 | -- | 79.64 | 410 | 0.083 | 11.4 |
| 144.84 | 0.561 | 14 | -- | 3.61 | 2.74 | -- | -- | -0.429 | 8.55 | 30 | 698 | 10 | 5.13 |
| 731.37 | 1.26 | 14.1 | -1.58 | -- | -- | -- | -- | -0.863 | -- | -- | -- | -- | -- |
| 230.24 | 0.71 | 14 | -- | 3.15 | -- | -- | -- | -0.709 | 8.95 | -- | -- | -- | -- |
| 242.15 | 0.725 | 14.1 | -- | -- | 2.82 | -- | -- | -0.681 | -- | 134.7 | 400 | 0.0167 | 11.8 |
| 797.18 | 1.32 | 14.1 | -- | -- | -- | -- | -- | -0.687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 5 |
| 2 | 99.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 3 |
| 23 | 104.88 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 8 |
| 59 | 108.59 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 14 |
| 63 | 109.05 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 9 |
| 67 | 109.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 11 |
| 78 | 109.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 80 | 109.89 | temperature | 25 | 720 | < th | dose independent | sin | 1 | NA |
| 92 | 110.23 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 110 | 110.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 126 | 111.26 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 4 |
| 130 | 111.47 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 133 | 111.57 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 7 |
| 164 | 112.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 172 | 112.31 | temperature | 10 | 270 | > th | dose dependent | sin | 16 | NA |
| 175 | 112.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 198 | 112.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 234 | 113.44 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 236 | 113.50 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 7 |
| 252 | 113.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 311 | 114.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 318 | 114.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 323 | 114.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 15 |
| 359 | 114.66 | temperature | 25 | 720 | > th | dose dependent | sin | 3 | NA |
| 369 | 114.72 | temperature | 25 | 720 | > th | dose independent | sin | 1 | NA |
| 371 | 114.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 425 | 115.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 573 | 116.29 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 910 | 118.14 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 966 | 118.43 | temperature | 25 | 270 | > th | dose dependent | sin | 15 | NA |
| 978 | 118.48 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 14 |