Os02g0728600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to H/ACA ribonucleoprotein complex subunit 2 (H/ACA snoRNP protein NHP2) (High mobility group-like nuclear protein 2).
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Os02g0728600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to H/ACA ribonucleoprotein complex subunit 2 (H/ACA snoRNP protein NHP2) (High mobility group-like nuclear protein 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.75 | 0.304 | 11.4 | -0.551 | 0.839 | 0.0744 | -0.502 | -3.84 | -0.0552 | 17.4 | 29.54 | 1196 | -- | -- |
| 42.31 | 0.303 | 11.3 | 0.0969 | 0.849 | -0.354 | -0.521 | -- | -0.0551 | 17.4 | 31.2 | 1193 | -- | -- |
| 42.36 | 0.303 | 11.4 | -0.539 | 0.837 | 0.0709 | -- | -3.77 | -0.0583 | 17.4 | 29.53 | 1192 | -- | -- |
| 42.84 | 0.305 | 11.3 | 0.112 | 0.843 | -0.352 | -- | -- | -0.0458 | 17.4 | 31.2 | 1178 | -- | -- |
| 78.32 | 0.412 | 11.4 | -0.765 | -- | 0.0954 | -- | -4.66 | -0.116 | -- | 29.05 | 1251 | -- | -- |
| 48.44 | 0.326 | 11.3 | 0.0209 | 0.873 | -- | -0.377 | -- | 0.024 | 17.2 | -- | -- | -- | -- |
| 48.79 | 0.327 | 11.3 | 0.0214 | 0.87 | -- | -- | -- | 0.0223 | 17.2 | -- | -- | -- | -- |
| 79.67 | 0.416 | 11.3 | 0.0999 | -- | -0.42 | -- | -- | -0.0761 | -- | 31.3 | 1215 | -- | -- |
| 43.14 | 0.306 | 11.3 | -- | 0.843 | -0.342 | -- | -- | -0.0512 | 17.4 | 31.2 | 1175 | -- | -- |
| 88.43 | 0.439 | 11.3 | -0.00924 | -- | -- | -- | -- | 0.000378 | -- | -- | -- | -- | -- |
| 48.8 | 0.327 | 11.3 | -- | 0.87 | -- | -- | -- | 0.0199 | 17.2 | -- | -- | -- | -- |
| 79.91 | 0.416 | 11.3 | -- | -- | -0.409 | -- | -- | -0.0849 | -- | 31.22 | 1204 | -- | -- |
| 88.44 | 0.439 | 11.3 | -- | -- | -- | -- | -- | 0.0014 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 10 | 38.18 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 11 | 38.27 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 49 | 39.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 77 | 39.56 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 82 | 39.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 89 | 39.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 90 | 39.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 93 | 39.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 95 | 39.84 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 105 | 39.92 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 110 | 39.96 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 141 | 40.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 142 | 40.19 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 148 | 40.23 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 168 | 40.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 177 | 40.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 178 | 40.40 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 184 | 40.44 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 203 | 40.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 205 | 40.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 223 | 40.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 224 | 40.61 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 225 | 40.63 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 2 |
| 228 | 40.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 232 | 40.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 233 | 40.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 234 | 40.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 239 | 40.66 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 245 | 40.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 246 | 40.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 250 | 40.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 252 | 40.71 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 261 | 40.74 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 19 |
| 265 | 40.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 267 | 40.76 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 268 | 40.76 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 271 | 40.77 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 287 | 40.81 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 290 | 40.81 | wind | 5.0 | 90 | < th | dose dependent | rect. | 2 | 7 |
| 292 | 40.82 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 308 | 40.85 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 322 | 40.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 327 | 40.90 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 330 | 40.91 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 332 | 40.91 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 334 | 40.91 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 6 |
| 337 | 40.91 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 17 |
| 338 | 40.91 | temperature | 10.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 339 | 40.91 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 340 | 40.91 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 357 | 40.94 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 358 | 40.94 | wind | 9.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 360 | 40.94 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 365 | 40.95 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 385 | 40.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 391 | 40.98 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 399 | 40.98 | wind | 7.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 401 | 40.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 403 | 40.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 405 | 40.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 407 | 41.00 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 412 | 41.00 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 416 | 41.01 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 419 | 41.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 429 | 41.03 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 445 | 41.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 468 | 41.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 478 | 41.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 481 | 41.08 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 493 | 41.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 513 | 41.13 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 18 |
| 514 | 41.13 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 516 | 41.14 | wind | 5.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 518 | 41.14 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 527 | 41.14 | wind | 5.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 556 | 41.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 569 | 41.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 637 | 41.28 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 639 | 41.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 641 | 41.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 8 |
| 649 | 41.28 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 651 | 41.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 652 | 41.28 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 654 | 41.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 660 | 41.29 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 768 | 41.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 16 |
| 773 | 41.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 816 | 41.42 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 823 | 41.43 | wind | 9.0 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 824 | 41.44 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 837 | 41.44 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 849 | 41.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 851 | 41.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 852 | 41.45 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 869 | 41.46 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 892 | 41.48 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 7 |
| 919 | 41.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 926 | 41.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 952 | 41.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 976 | 41.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 977 | 41.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 978 | 41.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 980 | 41.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 981 | 41.54 | radiation | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 988 | 41.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 992 | 41.54 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 996 | 41.55 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 3 |